Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012438.1 Corchorus capsularis cultivar CVL-1 contig12459, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52992

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2753--2791
4
9.8
4
89
10
62
23
0
0
76
0.78
4165--4196
3
10.3
3
93
6
55
65
0
34
0
0.93
19082--19115
2
16.5
2
87
6
50
47
2
2
47
1.32
22905--22935
15
2.1
15
93
0
53
38
25
12
22
1.90
26649--26708
31
1.9
31
86
6
86
46
5
15
33
1.67
33628--33788
79
2.0
79
95
0
286
29
26
11
32
1.91
46910--46938
4
7.5
4
92
7
51
0
24
0
75
0.80
48666--48696
6
5.2
6
100
0
62
51
16
0
32
1.44
51800--52326
263
2.0
264
94
0
921
46
8
5
39
1.57
52295--52338
23
1.9
23
85
0
61
50
4
6
38
1.50
52432--52678
78
3.2
78
92
1
388
49
0
12
36
1.46
52487--52608
39
3.1
39
64
17
108
48
0
15
36
1.46

Tables:   1

The End!