Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012444.1 Corchorus capsularis cultivar CVL-1 contig12465, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  119206

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3387--3424
3
13.0
3
94
5
69
65
0
0
34
0.93
22159--22195
5
7.4
5
93
0
65
37
0
0
62
0.96
27949--27974
3
8.7
3
100
0
52
0
30
0
69
0.89
28311--28346
18
2.0
18
100
0
72
16
16
16
50
1.79
28564--28620
23
2.5
23
80
5
62
52
14
12
21
1.73
30483--30518
5
7.2
5
100
0
72
0
0
19
80
0.71
30511--30557
22
2.1
23
92
4
78
27
0
12
59
1.34
42827--42891
31
2.1
31
88
5
96
41
24
15
18
1.89
44553--44744
93
2.1
93
94
0
348
39
6
10
43
1.66
47141--47182
19
2.3
19
87
4
59
19
4
11
64
1.44
48240--48266
2
13.5
2
100
0
54
0
0
48
51
1.00
49814--49863
2
25.0
2
100
0
100
50
0
50
0
1.00
59593--59765
15
11.9
15
73
8
117
34
17
23
24
1.96
59593--59765
30
5.5
30
81
11
202
34
17
23
24
1.96
59632--59763
69
1.9
69
92
0
219
34
19
22
23
1.97
67829--67868
21
2.0
21
85
5
55
20
15
45
20
1.86
69855--69879
12
2.1
12
100
0
50
0
8
0
92
0.40
69857--69881
13
1.9
13
100
0
50
0
8
0
92
0.40
90019--90081
31
2.0
31
96
0
117
34
30
3
31
1.74
100617--100942
81
4.0
81
91
0
490
42
14
19
23
1.88
114038--114064
3
9.0
3
100
0
54
66
0
0
33
0.92
115613--119070
656
5.3
656
84
5
4409
35
15
14
34
1.88

Tables:   1

The End!