Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012445.1 Corchorus capsularis cultivar CVL-1 contig12466, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99304

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--44
2
22.0
2
100
0
88
50
0
0
50
1.00
4556--4592
18
2.1
18
94
0
65
16
18
16
48
1.81
15547--15820
100
2.7
100
90
0
413
30
18
17
33
1.94
15826--15895
31
2.2
32
87
2
97
31
15
10
42
1.80
15956--15997
19
2.2
19
100
0
84
38
9
23
28
1.86
26759--26797
19
2.1
19
100
0
78
46
0
28
25
1.53
36703--36727
4
6.2
4
100
0
50
52
0
0
48
1.00
39058--39113
13
4.4
12
80
14
60
0
16
0
83
0.64
39053--39119
16
4.2
16
79
11
68
0
14
1
83
0.72
39058--39118
27
2.3
26
86
13
88
0
14
1
83
0.72
46241--46280
17
2.4
17
86
0
53
35
25
10
30
1.88
46250--46282
17
1.9
17
100
0
66
30
27
12
30
1.92
48010--48038
13
2.2
13
100
0
58
93
6
0
0
0.36
49237--49280
21
2.0
22
83
12
56
18
36
9
36
1.82
50014--50176
80
2.0
82
90
2
258
32
12
11
43
1.78
52383--52420
19
2.0
19
90
10
60
28
2
5
63
1.30
52586--52623
19
2.0
19
85
10
51
31
2
5
60
1.33
52731--52768
19
2.0
19
90
10
60
28
2
5
63
1.30
52834--52880
19
2.6
19
86
6
71
29
0
4
65
1.11
52820--52979
84
1.8
87
92
7
272
26
1
9
62
1.36
53031--53073
20
2.1
21
79
12
54
30
2
4
62
1.28
52895--53102
107
2.0
107
90
3
332
32
3
10
54
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55193--55274
39
2.1
39
100
0
164
26
17
17
39
1.91
56190--56238
25
1.9
26
91
4
82
24
6
24
44
1.76
61469--61494
13
2.0
13
100
0
52
30
23
15
30
1.95
71675--71719
24
1.9
23
86
4
63
35
6
26
31
1.82
75816--75848
2
16.5
2
100
0
66
48
0
0
51
1.00
77759--77788
3
10.0
3
92
0
51
0
30
33
36
1.58
78255--78295
3
13.7
3
89
0
64
0
26
34
39
1.57
78220--78298
6
13.2
6
88
5
61
1
16
32
49
1.54
86415--86469
2
27.0
2
85
3
74
49
5
0
45
1.25
87164--87224
2
30.5
2
83
6
79
54
3
0
42
1.17
89231--89259
2
14.5
2
100
0
58
48
0
0
51
1.00
94304--94367
3
21.3
3
100
0
128
65
0
0
34
0.93
96386--96427
21
2.0
21
85
0
57
57
2
0
40
1.12
98135--99303
332
3.5
335
93
1
1985
33
18
16
31
1.93

Tables:   1

The End!