Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012446.1 Corchorus capsularis cultivar CVL-1 contig12467, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10228

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
365--1972
333
4.8
332
92
0
2516
33
17
16
32
1.92
5883--5979
26
3.7
26
77
13
108
55
5
21
17
1.61
5878--5979
53
1.9
53
86
4
143
55
5
20
17
1.62
6053--6119
35
1.9
35
84
0
89
53
4
19
22
1.62
6150--6439
21
13.5
22
75
7
197
54
5
20
19
1.63
6149--6397
106
2.3
106
81
4
268
55
5
20
18
1.62
6248--6351
43
2.5
41
80
13
113
52
4
21
21
1.64
6604--6684
35
2.4
34
87
4
117
56
3
23
16
1.55
6636--6680
20
2.2
20
84
0
54
60
2
24
13
1.45
6662--6776
14
8.4
14
66
12
60
53
0
31
14
1.48
6632--6744
7
16.6
7
69
15
76
56
0
27
15
1.45
6670--6744
19
3.8
19
74
10
78
56
0
29
14
1.39
6634--6706
27
2.7
27
81
6
78
58
1
26
13
1.43
6636--6770
48
2.9
47
83
10
177
55
1
27
15
1.49
6731--6843
35
3.2
36
80
6
124
52
4
28
15
1.62
6535--6840
69
4.6
69
71
16
248
52
3
28
15
1.59
6882--6948
21
3.1
21
72
10
64
50
7
16
25
1.71
7421--10228
332
8.5
332
90
3
4179
33
17
16
32
1.92

Tables:   1

The End!