Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01012447.1 Corchorus capsularis cultivar CVL-1 contig12468, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7267
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34
Found at i:1317 original size:332 final size:332
Alignment explanation
Indices: 49--2741 Score: 3998
Period size: 333 Copynumber: 8.2 Consensus size: 332
39 ATATAGATAT
49 TGCAAAACTGAGCCGGGCCCTCGGAACGCGTTTTTAGTCAAAAACCGTGATGGTTAGTACATGAT
1 TGCAAAACTGAGCCGGGCCC-CGGAACGCGTTTTTAGTCAAAAACCGTGATGGTTAGTACATGAT
** * * * *
114 TTCGGAAAAAATTTAGCAAAATTTGATCCTAAACATTTCTCCTCAATTTTCGGCCTTAAATACTC
65 TTCGGCTAAAATTTTGCAAAATTTGACCCGAAACATTTCTCCTCAATTTTCGGCCATAAATACTC
* * *
179 ATGAAAAATATATAACTTAACGCCAAAAAGATTGAAGGGCTTCTCACGCATGTAATATCATTTTT
130 ATGAAAAATATACAACTCAACGCAAAAAAGATTGAAGGGCTTCTCACGCATGTAATATCATTTTT
* * *
244 CCTATTTCTTTCGAATTAGTTTCTGATTAAATCGAAACCGGATTTAGATGCTCGTAAAAACATAT
195 CCTATTTTTTTCGAATTAGTTTCTGATTAAATCGAAACCGGATTGAGATGCTCGTAAAAACAAAT
*
309 CCTTAATTCCAAAGAGGGTGATCTTTCATTATATGAATATAGATATTGCAATGAGTCTTGTTGCC
260 CCTTAATTCCAAAGTGGGTGATCTTTCATTATATGAATATAGATATTGCAATGAGTCTTGTTGCC
374 AAAAATCA
325 AAAAATCA
* * * *
382 AGCAAAACTTAGCCGGGCCCTCGGAACACGTTTTTTGTCAAAAACCGTGATGGTTAGTACATGAT
1 TGCAAAACTGAGCCGGGCCC-CGGAACGCGTTTTTAGTCAAAAACCGTGATGGTTAGTACATGAT
* *
447 TTCGGCTAAAATTTTGCAAAATTTGACCCGAAACATTTCTCCTCAATTTTCCGCCATAAATGCTC
65 TTCGGCTAAAATTTTGCAAAATTTGACCCGAAACATTTCTCCTCAATTTTCGGCCATAAATACTC
* *
512 ATGAAAAATATACAATTCAACGCAAAAAAAAAATTGAAGGGCTTC-CAACGCATGTAATATCATT
130 ATGAAAAATATACAACTCAACGC--AAAAAAGATTGAAGGGCTTCTC-ACGCATGTAATATCATT
* *
576 TTTCCTATTTTTTTTGAATTAGTTTCTGATTAAATCGAAACCGGATTGAGATTCTCGTAAAAACA
192 TTTCCTATTTTTTTCGAATTAGTTTCTGATTAAATCGAAACCGGATTGAGATGCTCGTAAAAACA
*
641 AATCCTTAATTCCAAAGTGGGTGATCTTTCATTATATGAATATAGATATTGCAATGATTCTTGTT
257 AATCCTTAATTCCAAAGTGGGTGATCTTTCATTATATGAATATAGATATTGCAATGAGTCTTGTT
*
706 GCCAAAAATCT
322 GCCAAAAATCA
* * * * *
717 TGCAAAACTTAGCCAGGTCCCCGGAACACGTTTTTAGTCAAAAACTGTGATGCTTAGTACATGAT
1 TGCAAAACTGAGCC-GGGCCCCGGAACGCGTTTTTAGTCAAAAACCGTGATGGTTAGTACATGAT
** * *
782 TTCGGCTAAAATTTTGCAAAATTTGGTCCTAAACATTTCTCCTCAATTTTTGGCCATAAATACTC
65 TTCGGCTAAAATTTTGCAAAATTTGACCCGAAACATTTCTCCTCAATTTTCGGCCATAAATACTC
* * *
847 ATGAAAAATATATAGCTCAACGCCAAAAAGATTGAAGGGCTTCTCACGCATGTAATATCATTTTT
130 ATGAAAAATATACAACTCAACGCAAAAAAGATTGAAGGGCTTCTCACGCATGTAATATCATTTTT
912 CCTATTTTTTTCGAATTAGTTTCTGATTAAATCGAAACCGGATTGAGATGCTCGTAAAAACAAAT
195 CCTATTTTTTTCGAATTAGTTTCTGATTAAATCGAAACCGGATTGAGATGCTCGTAAAAACAAAT
* *
977 CCTTAATTCCAAAGTGTGTGATCTTTCATTATATGAATATAGATATTGCAATGAGTCTTTTTGCC
260 CCTTAATTCCAAAGTGGGTGATCTTTCATTATATGAATATAGATATTGCAATGAGTCTTGTTGCC
1042 AAAAATCA
325 AAAAATCA
* * *
1050 TGCAAAACTGAGCCGGGTTCCCGGAACGCGTCTTTAGTC-AAAACTAGTGATGGTTAGTACATGA
1 TGCAAAACTGAGCCGGG-CCCCGGAACGCGTTTTTAGTCAAAAAC-CGTGATGGTTAGTACATGA
*
1114 TTTCGGCTAAAATTTTGCAAAATTTGACCCGAAA-ATTTCTCCTCAATTTTCAGCCATAAATGA-
64 TTTCGGCTAAAATTTTGCAAAATTTGACCCGAAACATTTCTCCTCAATTTTCGGCCATAAAT-AC
* **
1177 TCATGAAAAATATACAACTCAAAGCAAAAAAGATTGAAGGGCTTCTCACTTATGTAATATCATTT
128 TCATGAAAAATATACAACTCAACGCAAAAAAGATTGAAGGGCTTCTCACGCATGTAATATCATTT
* * *
1242 TTCCTATTTTTTTCGAAGTACTTTCTGATTAAA-CAGAAACCGGATTGAGATGCTTGTAAAAACA
193 TTCCTATTTTTTTCGAATTAGTTTCTGATTAAATC-GAAACCGGATTGAGATGCTCGTAAAAACA
* *
1306 AATCCTTAATTCCAAAGTGGGTGATCTTTCATTATATGAATATAGATAATGCAACGAGTCTTGTT
257 AATCCTTAATTCCAAAGTGGGTGATCTTTCATTATATGAATATAGATATTGCAATGAGTCTTGTT
1371 GCCAAAAATCA
322 GCCAAAAATCA
* * ** *
1382 AGCAAAACTGAGCCGGGCCCCCGGAATGCGTTTTTAGTCAAAAACCGTGATAATTAGTATATGAT
1 TGCAAAACTGAGCCGGG-CCCCGGAACGCGTTTTTAGTCAAAAACCGTGATGGTTAGTACATGAT
*
1447 TTCGGCTAAAATTCTGCAAAATTTGACCCGAAACATTTCTCCTCAATTTTCGGCCATAAATACTC
65 TTCGGCTAAAATTTTGCAAAATTTGACCCGAAACATTTCTCCTCAATTTTCGGCCATAAATACTC
* * *
1512 ATGAAAAATATACAACTCAACGCAAAAAAGTTTGAAGGGCTTCTCACTCCTGTAATATCATTTTT
130 ATGAAAAATATACAACTCAACGCAAAAAAGATTGAAGGGCTTCTCACGCATGTAATATCATTTTT
* * * *
1577 CCTATTTTTTCCGAATTAGTTTCCGATTAAATCGAAACCGGATTGAGATACTCGTAAAAAAAAAT
195 CCTATTTTTTTCGAATTAGTTTCTGATTAAATCGAAACCGGATTGAGATGCTCGTAAAAACAAAT
* *
1642 TCTTAATTCCAAAGTGGGTGATCTTTCATTATGTGAATATAGATATTGCAATGAGTCTTGTTGCC
260 CCTTAATTCCAAAGTGGGTGATCTTTCATTATATGAATATAGATATTGCAATGAGTCTTGTTGCC
1707 AAAAATCA
325 AAAAATCA
* *
1715 TGCAAAACTGAGTCGGGCCCTCGAAACGCGTTTTTAGTCAAAAACCGTGA----T-GTACATGAT
1 TGCAAAACTGAGCCGGGCCC-CGGAACGCGTTTTTAGTCAAAAACCGTGATGGTTAGTACATGAT
** * *
1775 TTCGGCTAAAATTTTGCAAAATTTGGTCCGAAACATGTCTCCTCAATTTTTGGCCATAAATACTC
65 TTCGGCTAAAATTTTGCAAAATTTGACCCGAAACATTTCTCCTCAATTTTCGGCCATAAATACTC
* * * * *
1840 AGGAAAAATATACAACTCAATGCCAAAAAGATTGAAGGGCTTCTCACGCATGTAATATTATTTTC
130 ATGAAAAATATACAACTCAACGCAAAAAAGATTGAAGGGCTTCTCACGCATGTAATATCATTTTT
* *
1905 CCTA-TTTTTTCGAAGTAGTTTCTGATTAAATCGAAACCGGATTGAGATGCTCGTAATAACAAAT
195 CCTATTTTTTTCGAATTAGTTTCTGATTAAATCGAAACCGGATTGAGATGCTCGTAAAAACAAAT
* *
1969 CCTTAATTCCAAAGTGGGTGATCTTTCATTATATGAATATAGATATTACAATGAGTCTTTTTGCC
260 CCTTAATTCCAAAGTGGGTGATCTTTCATTATATGAATATAGATATTGCAATGAGTCTTGTTGCC
*
2034 AATAATCA
325 AAAAATCA
*
2042 TGCAAAACTGAGCCGGACCCCCGGAACGCGTTTTTAGTCAAAACACAC-TGATGGTTAGTACATG
1 TGCAAAACTGAGCCGG-GCCCCGGAACGCGTTTTTAGTCAAAA-AC-CGTGATGGTTAGTACATG
* * *
2106 ATTTCGGCTAAAATTTTCCAAAATTTGACCCGGAACATTTCCCCTCAATTTTCGGCCAT-AATAC
63 ATTTCGGCTAAAATTTTGCAAAATTTGACCCGAAACATTTCTCCTCAATTTTCGGCCATAAATAC
**
2170 AAATGAAAAATATACAACTCAACGCAAAAAAGATTGAAGGGCTTCTCACGCATGTAATATCATTT
128 TCATGAAAAATATACAACTCAACGCAAAAAAGATTGAAGGGCTTCTCACGCATGTAATATCATTT
* *
2235 TTCCTATTTTTTTCGAAGTAGTTTCTGATTAAACCGAAACCGGATTGAGATGCTCGTAAAAACAA
193 TTCCTATTTTTTTCGAATTAGTTTCTGATTAAATCGAAACCGGATTGAGATGCTCGTAAAAACAA
* *
2300 ATCCTTAATTCCAAAGTGGGTGATCTATCATTATATAAATATAGATATTGCAATGAGTCTTGTTG
258 ATCCTTAATTCCAAAGTGGGTGATCTTTCATTATATGAATATAGATATTGCAATGAGTCTTGTTG
2365 CCAAAAATCA
323 CCAAAAATCA
* *
2375 TGCAAAACTGAGCCGAGCCCCCGAACGC-------GT---------T--T--TTAGTACATGATT
1 TGCAAAACTGAGCCGGGCCCCGGAACGCGTTTTTAGTCAAAAACCGTGATGGTTAGTACATGATT
* * ** *
2420 TCGGCTAAAATCTTGAAAAATTTGGTCCGAAACATTTCTCCTCAATTTTTTGGCCATAAATACTC
66 TCGGCTAAAATTTTGCAAAATTTGACCCGAAACATTTCTCCTCAA-TTTTCGGCCATAAATACTC
* *
2485 ATGAAAAATATATAACTCAACGCCAAAAAGATTGAAGGGCTTCTCACGCATGTAATATCATTTTT
130 ATGAAAAATATACAACTCAACGCAAAAAAGATTGAAGGGCTTCTCACGCATGTAATATCATTTTT
* * * *
2550 CCTA-TTTTTTCGAATTTGTTTCTGATTAAATCGAAACCTGATTGAGATGCTC-AAAAAACAAGT
195 CCTATTTTTTTCGAATTAGTTTCTGATTAAATCGAAACCGGATTGAGATGCTCGTAAAAACAAAT
* *
2613 CCTTAATTCCAAAGTCGGTGATCTTTCATTATATGAATATAGATGTTGCAATGAGTCTTGTTGCC
260 CCTTAATTCCAAAGTGGGTGATCTTTCATTATATGAATATAGATATTGCAATGAGTCTTGTTGCC
2678 AAAAATCA
325 AAAAATCA
* * *
2686 TACAAAACTGAGCCGGGCCCCCGAAACACGTTTTTAGTCAAAAACCGTGATGGTTA
1 TGCAAAACTGAGCCGGG-CCCCGGAACGCGTTTTTAGTCAAAAACCGTGATGGTTA
2742 CCCCATAACA
Statistics
Matches: 2133, Mismatches: 181, Indels: 93
0.89 0.08 0.04
Matches are distributed among these distances:
311 144 0.07
312 62 0.03
313 73 0.03
315 1 0.00
319 2 0.00
325 2 0.00
327 158 0.07
328 138 0.06
329 2 0.00
330 1 0.00
331 1 0.00
332 391 0.18
333 849 0.40
334 3 0.00
335 301 0.14
336 5 0.00
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.32
Consensus pattern (332 bp):
TGCAAAACTGAGCCGGGCCCCGGAACGCGTTTTTAGTCAAAAACCGTGATGGTTAGTACATGATT
TCGGCTAAAATTTTGCAAAATTTGACCCGAAACATTTCTCCTCAATTTTCGGCCATAAATACTCA
TGAAAAATATACAACTCAACGCAAAAAAGATTGAAGGGCTTCTCACGCATGTAATATCATTTTTC
CTATTTTTTTCGAATTAGTTTCTGATTAAATCGAAACCGGATTGAGATGCTCGTAAAAACAAATC
CTTAATTCCAAAGTGGGTGATCTTTCATTATATGAATATAGATATTGCAATGAGTCTTGTTGCCA
AAAATCA
Found at i:1533 original size:665 final size:663
Alignment explanation
Indices: 50--2741 Score: 3990
Period size: 665 Copynumber: 4.1 Consensus size: 663
40 TATAGATATT
*
50 GCAAAACTGAGCCGGGCCCTCGGAACGCGTTTTTAGTCAAAAACCGTGATGGTTAGTACATGATT
1 GCAAAACTGAGCCGGGCCCCCGGAACGCGTTTTTAGTCAAAAACCGTGATGGTTAGTACATGATT
** * * * *
115 TCGGAAAAAATTTAGCAAAATTTGATCCTAAACATTTCTCCTCAATTTTCGGCCTTAAATACTCA
66 TCGGCTAAAATTTTGCAAAATTTGACCCGAAACATTTCTCCTCAATTTTCGGCCATAAATACTCA
* * *
180 TGAAAAATATATAACTTAACGCCAAAAAGATTGAAGGGCTTCTCACGCATGTAATATCATTTTTC
131 TGAAAAATATACAACTCAACGCAAAAAAGATTGAAGGGCTTCTCACGCATGTAATATCATTTTTC
* * *
245 CTATTTCTTTCGAATTAGTTTCTGATTAAATCGAAACCGGATTTAGATGCTCGTAAAAACATATC
196 CTATTTTTTTCGAATTAGTTTCTGATTAAATCGAAACCGGATTGAGATGCTCGTAAAAACAAATC
*
310 CTTAATTCCAAAGAGGGTGATCTTTCATTATATGAATATAGATATTGCAATGAGTCTTGTTGCCA
261 CTTAATTCCAAAGTGGGTGATCTTTCATTATATGAATATAGATATTGCAATGAGTCTTGTTGCCA
* * * * *
375 AAAATCAAGCAAAACTTAGCCGGGCCCTCGGAACACGTTTTTTGTCAAAAACCGTGATGGTTAGT
326 AAAATCATGCAAAACTGAGCCGGGCCCTCGGAACGCGTCTTTAGTCAAAAACCGTGAT--TTAGT
*
440 ACATGATTTCGGCTAAAATTTTGCAAAATTTGACCCGAAACATTTCTCCTCAATTTTCCGCCATA
389 ACATGATTTCGGCTAAAATTTTGCAAAATTTGACCCGAAACATTTCTCCTCAATTTTCGGCCATA
* * *
505 AATGCTCATGAAAAATATACAATTCAACGCAAAAAAAAAATTGAAGGGCTTC-CAACGCATGTAA
454 AATACTCATGAAAAATATACAACTCAACGC--AAAAAAGATTGAAGGGCTTCTC-ACGCATGTAA
* * *
569 TATCATTTTTCCTATTTTTTTTGAATTAGTTTCTGATTAAATCGAAACCGGATTGAGATTCTCGT
516 TATCATTTTTCCTA-TTTTTTCGAAGTAGTTTCTGATTAAATCGAAACCGGATTGAGATGCTCGT
*
634 AAAAACAAATCCTTAATTCCAAAGTGGGTGATCTTTCATTATATGAATATAGATATTGCAATGAT
580 AAAAACAAATCCTTAATTCCAAAGTGGGTGATCTTTCATTATATGAATATAGATATTGCAATGAG
**
699 TCTTGTTGCCAAAAATCTT
645 TCTTGTTGCCAAAAATCAA
* * * * * *
718 GCAAAACTTAGCCAGGTCCCCGGAACACGTTTTTAGTCAAAAACTGTGATGCTTAGTACATGATT
1 GCAAAACTGAGCCGGGCCCCCGGAACGCGTTTTTAGTCAAAAACCGTGATGGTTAGTACATGATT
** * *
783 TCGGCTAAAATTTTGCAAAATTTGGTCCTAAACATTTCTCCTCAATTTTTGGCCATAAATACTCA
66 TCGGCTAAAATTTTGCAAAATTTGACCCGAAACATTTCTCCTCAATTTTCGGCCATAAATACTCA
* * *
848 TGAAAAATATATAGCTCAACGCCAAAAAGATTGAAGGGCTTCTCACGCATGTAATATCATTTTTC
131 TGAAAAATATACAACTCAACGCAAAAAAGATTGAAGGGCTTCTCACGCATGTAATATCATTTTTC
913 CTATTTTTTTCGAATTAGTTTCTGATTAAATCGAAACCGGATTGAGATGCTCGTAAAAACAAATC
196 CTATTTTTTTCGAATTAGTTTCTGATTAAATCGAAACCGGATTGAGATGCTCGTAAAAACAAATC
* *
978 CTTAATTCCAAAGTGTGTGATCTTTCATTATATGAATATAGATATTGCAATGAGTCTTTTTGCCA
261 CTTAATTCCAAAGTGGGTGATCTTTCATTATATGAATATAGATATTGCAATGAGTCTTGTTGCCA
* *
1043 AAAATCATGCAAAACTGAGCCGGGTTCC-CGGAACGCGTCTTTAGTC-AAAACTAGTGATGGTTA
326 AAAATCATGCAAAACTGAGCCGGG-CCCTCGGAACGCGTCTTTAGTCAAAAAC-CGTGAT--TTA
*
1106 GTACATGATTTCGGCTAAAATTTTGCAAAATTTGACCCGAAA-ATTTCTCCTCAATTTTCAGCCA
387 GTACATGATTTCGGCTAAAATTTTGCAAAATTTGACCCGAAACATTTCTCCTCAATTTTCGGCCA
* **
1170 TAAATGA-TCATGAAAAATATACAACTCAAAGCAAAAAAGATTGAAGGGCTTCTCACTTATGTAA
452 TAAAT-ACTCATGAAAAATATACAACTCAACGCAAAAAAGATTGAAGGGCTTCTCACGCATGTAA
* *
1234 TATCATTTTTCCTATTTTTTTCGAAGTACTTTCTGATTAAA-CAGAAACCGGATTGAGATGCTTG
516 TATCATTTTTCCTA-TTTTTTCGAAGTAGTTTCTGATTAAATC-GAAACCGGATTGAGATGCTCG
* *
1298 TAAAAACAAATCCTTAATTCCAAAGTGGGTGATCTTTCATTATATGAATATAGATAATGCAACGA
579 TAAAAACAAATCCTTAATTCCAAAGTGGGTGATCTTTCATTATATGAATATAGATATTGCAATGA
1363 GTCTTGTTGCCAAAAATCAA
644 GTCTTGTTGCCAAAAATCAA
* ** *
1383 GCAAAACTGAGCCGGGCCCCCGGAATGCGTTTTTAGTCAAAAACCGTGATAATTAGTATATGATT
1 GCAAAACTGAGCCGGGCCCCCGGAACGCGTTTTTAGTCAAAAACCGTGATGGTTAGTACATGATT
*
1448 TCGGCTAAAATTCTGCAAAATTTGACCCGAAACATTTCTCCTCAATTTTCGGCCATAAATACTCA
66 TCGGCTAAAATTTTGCAAAATTTGACCCGAAACATTTCTCCTCAATTTTCGGCCATAAATACTCA
* * *
1513 TGAAAAATATACAACTCAACGCAAAAAAGTTTGAAGGGCTTCTCACTCCTGTAATATCATTTTTC
131 TGAAAAATATACAACTCAACGCAAAAAAGATTGAAGGGCTTCTCACGCATGTAATATCATTTTTC
* * * * *
1578 CTATTTTTTCCGAATTAGTTTCCGATTAAATCGAAACCGGATTGAGATACTCGTAAAAAAAAATT
196 CTATTTTTTTCGAATTAGTTTCTGATTAAATCGAAACCGGATTGAGATGCTCGTAAAAACAAATC
*
1643 CTTAATTCCAAAGTGGGTGATCTTTCATTATGTGAATATAGATATTGCAATGAGTCTTGTTGCCA
261 CTTAATTCCAAAGTGGGTGATCTTTCATTATATGAATATAGATATTGCAATGAGTCTTGTTGCCA
* * *
1708 AAAATCATGCAAAACTGAGTCGGGCCCTCGAAACGCGTTTTTAGTCAAAAACCGTGA--T-GTAC
326 AAAATCATGCAAAACTGAGCCGGGCCCTCGGAACGCGTCTTTAGTCAAAAACCGTGATTTAGTAC
** * *
1770 ATGATTTCGGCTAAAATTTTGCAAAATTTGGTCCGAAACATGTCTCCTCAATTTTTGGCCATAAA
391 ATGATTTCGGCTAAAATTTTGCAAAATTTGACCCGAAACATTTCTCCTCAATTTTCGGCCATAAA
* * * *
1835 TACTCAGGAAAAATATACAACTCAATGCCAAAAAGATTGAAGGGCTTCTCACGCATGTAATATTA
456 TACTCATGAAAAATATACAACTCAACGCAAAAAAGATTGAAGGGCTTCTCACGCATGTAATATCA
* *
1900 TTTTCCCTATTTTTTCGAAGTAGTTTCTGATTAAATCGAAACCGGATTGAGATGCTCGTAATAAC
521 TTTTTCCTATTTTTTCGAAGTAGTTTCTGATTAAATCGAAACCGGATTGAGATGCTCGTAAAAAC
* *
1965 AAATCCTTAATTCCAAAGTGGGTGATCTTTCATTATATGAATATAGATATTACAATGAGTCTTTT
586 AAATCCTTAATTCCAAAGTGGGTGATCTTTCATTATATGAATATAGATATTGCAATGAGTCTTGT
* *
2030 TGCCAATAATCAT
651 TGCCAAAAATCAA
*
2043 GCAAAACTGAGCCGGACCCCCGGAACGCGTTTTTAGTCAAAACACAC-TGATGGTTAGTACATGA
1 GCAAAACTGAGCCGGGCCCCCGGAACGCGTTTTTAGTCAAAA-AC-CGTGATGGTTAGTACATGA
* * * *
2107 TTTCGGCTAAAATTTTCCAAAATTTGACCCGGAACATTTCCCCTCAATTTTCGGCCAT-AATACA
64 TTTCGGCTAAAATTTTGCAAAATTTGACCCGAAACATTTCTCCTCAATTTTCGGCCATAAATACT
*
2171 AATGAAAAATATACAACTCAACGCAAAAAAGATTGAAGGGCTTCTCACGCATGTAATATCATTTT
129 CATGAAAAATATACAACTCAACGCAAAAAAGATTGAAGGGCTTCTCACGCATGTAATATCATTTT
* *
2236 TCCTATTTTTTTCGAAGTAGTTTCTGATTAAACCGAAACCGGATTGAGATGCTCGTAAAAACAAA
194 TCCTATTTTTTTCGAATTAGTTTCTGATTAAATCGAAACCGGATTGAGATGCTCGTAAAAACAAA
* *
2301 TCCTTAATTCCAAAGTGGGTGATCTATCATTATATAAATATAGATATTGCAATGAGTCTTGTTGC
259 TCCTTAATTCCAAAGTGGGTGATCTTTCATTATATGAATATAGATATTGCAATGAGTCTTGTTGC
* *
2366 CAAAAATCATGCAAAACTGAGCCGAGCCC-CCGAA--CG-C----GT---------T--TTTAGT
324 CAAAAATCATGCAAAACTGAGCCGGGCCCTCGGAACGCGTCTTTAGTCAAAAACCGTGATTTAGT
* * ** *
2412 ACATGATTTCGGCTAAAATCTTGAAAAATTTGGTCCGAAACATTTCTCCTCAATTTTTTGGCCAT
389 ACATGATTTCGGCTAAAATTTTGCAAAATTTGACCCGAAACATTTCTCCTCAA-TTTTCGGCCAT
* *
2477 AAATACTCATGAAAAATATATAACTCAACGCCAAAAAGATTGAAGGGCTTCTCACGCATGTAATA
453 AAATACTCATGAAAAATATACAACTCAACGCAAAAAAGATTGAAGGGCTTCTCACGCATGTAATA
* * * *
2542 TCATTTTTCCTATTTTTTCGAATTTGTTTCTGATTAAATCGAAACCTGATTGAGATGCTC-AAAA
518 TCATTTTTCCTATTTTTTCGAAGTAGTTTCTGATTAAATCGAAACCGGATTGAGATGCTCGTAAA
* * *
2606 AACAAGTCCTTAATTCCAAAGTCGGTGATCTTTCATTATATGAATATAGATGTTGCAATGAGTCT
583 AACAAATCCTTAATTCCAAAGTGGGTGATCTTTCATTATATGAATATAGATATTGCAATGAGTCT
2671 TGTTGCCAAAAATCATA
648 TGTTGCCAAAAATCA-A
* *
2688 -CAAAACTGAGCCGGGCCCCCGAAACACGTTTTTAGTCAAAAACCGTGATGGTTA
1 GCAAAACTGAGCCGGGCCCCCGGAACGCGTTTTTAGTCAAAAACCGTGATGGTTA
2742 CCCCATAACA
Statistics
Matches: 1855, Mismatches: 151, Indels: 61
0.90 0.07 0.03
Matches are distributed among these distances:
642 1 0.00
643 13 0.01
644 166 0.09
645 128 0.07
652 2 0.00
657 2 0.00
659 3 0.00
660 417 0.22
661 160 0.09
662 1 0.00
664 3 0.00
665 504 0.27
666 6 0.00
667 54 0.03
668 393 0.21
669 2 0.00
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.32
Consensus pattern (663 bp):
GCAAAACTGAGCCGGGCCCCCGGAACGCGTTTTTAGTCAAAAACCGTGATGGTTAGTACATGATT
TCGGCTAAAATTTTGCAAAATTTGACCCGAAACATTTCTCCTCAATTTTCGGCCATAAATACTCA
TGAAAAATATACAACTCAACGCAAAAAAGATTGAAGGGCTTCTCACGCATGTAATATCATTTTTC
CTATTTTTTTCGAATTAGTTTCTGATTAAATCGAAACCGGATTGAGATGCTCGTAAAAACAAATC
CTTAATTCCAAAGTGGGTGATCTTTCATTATATGAATATAGATATTGCAATGAGTCTTGTTGCCA
AAAATCATGCAAAACTGAGCCGGGCCCTCGGAACGCGTCTTTAGTCAAAAACCGTGATTTAGTAC
ATGATTTCGGCTAAAATTTTGCAAAATTTGACCCGAAACATTTCTCCTCAATTTTCGGCCATAAA
TACTCATGAAAAATATACAACTCAACGCAAAAAAGATTGAAGGGCTTCTCACGCATGTAATATCA
TTTTTCCTATTTTTTCGAAGTAGTTTCTGATTAAATCGAAACCGGATTGAGATGCTCGTAAAAAC
AAATCCTTAATTCCAAAGTGGGTGATCTTTCATTATATGAATATAGATATTGCAATGAGTCTTGT
TGCCAAAAATCAA
Done.