Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012452.1 Corchorus capsularis cultivar CVL-1 contig12473, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21234

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2713--2748
17
2.1
17
100
0
72
30
16
11
41
1.83
2767--2841
36
2.1
36
87
0
105
36
17
10
36
1.84
2805--2864
27
2.2
27
85
5
77
33
26
13
26
1.93
2832--4289
36
43.0
36
72
19
1128
31
26
15
27
1.96
2869--3248
63
5.9
60
76
12
210
31
26
15
26
1.95
3066--3126
27
2.3
27
100
0
122
31
27
16
24
1.96
3128--4343
63
19.1
61
67
23
329
30
26
15
27
1.96
3263--3403
27
5.3
26
83
6
99
31
29
14
24
1.94
3263--3411
78
1.9
78
92
0
253
32
28
14
24
1.94
3431--3529
45
2.2
45
94
0
171
32
25
13
29
1.93
3395--3557
81
2.0
81
97
0
308
31
25
14
29
1.94
3933--3977
21
2.1
21
95
0
81
33
26
11
28
1.91
3870--4027
84
1.9
84
87
0
235
31
25
15
27
1.96
3992--4316
99
3.4
93
85
9
372
31
26
15
27
1.95
4091--4379
126
2.3
126
87
2
420
31
27
13
26
1.94
4217--4380
90
1.8
90
89
0
256
32
27
13
26
1.93
4636--4707
37
1.9
37
97
0
135
20
4
20
54
1.61
6494--7059
298
1.9
294
89
3
868
28
21
19
29
1.98
9903--9938
7
5.1
7
100
0
72
27
13
44
13
1.82

Tables:   1

The End!