Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012454.1 Corchorus capsularis cultivar CVL-1 contig12475, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  132568

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4--2757
656
4.2
657
86
4
3566
36
17
14
31
1.89
4--2873
325
8.7
328
85
4
3509
36
17
14
31
1.89
2965--2995
6
5.2
6
100
0
62
67
0
0
32
0.91
3515--3543
15
2.0
15
93
6
51
62
3
0
34
1.12
34716--34774
20
3.0
20
73
22
63
25
22
15
37
1.93
34766--34801
10
3.6
10
92
0
63
41
22
5
30
1.76
35798--35840
12
3.5
12
93
6
77
25
23
16
34
1.95
36333--36377
23
2.0
23
86
0
63
20
22
4
53
1.63
37477--37537
32
1.9
32
93
0
104
44
8
19
27
1.79
41543--41589
10
4.2
12
82
17
50
42
0
0
57
0.98
41551--41590
2
21.0
2
90
10
66
47
0
0
52
1.00
44486--44540
27
2.0
27
100
0
110
29
7
25
38
1.83
45102--45133
13
2.5
13
94
0
55
43
31
6
18
1.75
45523--45596
28
2.6
29
95
2
132
50
6
18
24
1.71
54070--54094
4
6.2
4
100
0
50
48
0
0
52
1.00
55830--55864
6
5.8
6
100
0
70
17
0
31
51
1.45
58884--58934
13
4.2
12
73
16
52
27
15
15
41
1.88
60124--60178
22
2.3
25
84
12
71
70
18
10
0
1.15
60133--60182
6
8.2
6
81
14
50
72
16
12
0
1.13
64620--64650
2
15.5
2
100
0
62
51
0
0
48
1.00
90881--90916
1
36.0
1
94
0
54
94
0
0
5
0.31
109919--109948
13
2.3
13
94
0
51
90
0
10
0
0.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112845--112902
29
2.0
29
82
0
71
22
15
13
48
1.80
113589--113670
31
2.7
31
84
1
103
40
12
23
24
1.88
125121--125172
21
2.4
21
72
15
52
50
3
1
44
1.31
125132--125177
18
2.6
17
80
10
56
52
4
2
41
1.33
125132--125175
21
2.1
21
86
0
61
52
4
2
40
1.34
126222--126250
8
3.8
8
90
9
51
86
0
0
13
0.58
126222--126250
15
1.9
15
100
0
58
86
0
0
13
0.58
126626--126683
27
2.2
26
87
3
80
24
34
10
31
1.89
132210--132356
72
2.0
72
100
0
294
23
16
23
37
1.93
132416--132453
17
2.2
17
90
0
58
42
0
10
47
1.38

Tables:   1

The End!