Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012455.1 Corchorus capsularis cultivar CVL-1 contig12476, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45918

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--31
2
15.0
2
93
6
53
48
3
0
48
1.17
357--381
13
1.9
13
100
0
50
16
28
8
48
1.74
1197--1253
30
1.9
30
85
7
80
33
19
8
38
1.82
3552--3733
90
2.0
90
95
0
328
30
17
18
33
1.94
11578--11627
24
2.0
24
88
3
73
18
2
20
60
1.46
18043--18097
17
3.2
17
80
10
67
21
21
18
38
1.94
23469--23495
2
13.5
2
100
0
54
48
0
0
51
1.00
24259--24334
40
1.9
40
88
0
116
28
14
14
42
1.85
26586--26621
1
36.0
1
100
0
72
0
0
0
100
0.00
28934--29054
41
3.0
41
100
0
242
33
19
7
38
1.80
30554--33015
320
7.6
318
78
7
2168
35
16
15
33
1.90
30163--33015
651
4.4
648
80
6
2727
35
16
14
33
1.90
30163--33019
331
8.8
327
77
7
2420
35
16
14
33
1.90
33026--43530
655
16.0
651
79
7
9169
35
16
14
33
1.90
34281--34318
18
2.1
18
90
0
58
42
18
15
23
1.89
33040--43498
986
10.6
976
84
6
9467
35
16
14
33
1.90
43364--43695
165
2.0
165
97
0
628
31
15
20
33
1.94
43042--44015
485
2.0
485
89
2
1503
33
16
16
33
1.91

Tables:   1

The End!