Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012457.1 Corchorus capsularis cultivar CVL-1 contig12478, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82696

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
858--886
13
2.3
13
94
5
51
41
17
13
27
1.87
944--1005
28
2.3
27
89
8
99
33
22
8
35
1.84
1840--1875
10
3.6
10
92
0
63
30
5
22
41
1.76
1837--1875
20
2.0
20
100
0
78
30
5
20
43
1.73
17408--17574
62
2.7
62
91
0
255
28
13
16
41
1.87
40243--40290
14
3.4
14
79
0
51
0
18
2
79
0.84
40261--40306
18
2.3
21
82
14
53
2
8
4
84
0.83
40261--40306
21
2.2
21
84
0
56
2
8
4
84
0.83
41841--41868
2
14.0
2
100
0
56
50
50
0
0
1.00
42195--42239
23
2.0
23
86
0
63
46
26
20
6
1.75
42196--42247
23
2.3
23
83
3
61
46
30
15
7
1.74
43282--43351
35
2.0
35
100
0
140
71
5
5
17
1.25
56004--56045
2
21.0
2
90
9
68
50
2
0
47
1.14
63372--63448
37
2.1
37
100
0
154
23
9
29
37
1.86
72838--72874
13
2.8
13
87
0
56
32
8
43
16
1.77
81411--82694
334
3.8
334
87
3
1805
37
15
14
32
1.87

Tables:   1

The End!