Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012459.1 Corchorus capsularis cultivar CVL-1 contig12480, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95791

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--1093
333
3.3
333
88
2
1595
37
15
14
32
1.88
3755--4555
335
2.4
333
92
2
1311
35
15
15
33
1.90
4689--6841
332
6.5
331
88
2
2848
37
15
14
33
1.88
4689--6841
999
2.2
998
86
3
3000
37
15
14
33
1.88
30735--30784
24
2.1
24
100
0
100
14
8
12
66
1.45
31932--31964
2
16.5
2
93
0
57
51
0
0
48
1.00
38858--38898
9
4.8
9
76
11
50
48
17
14
19
1.81
40751--40809
3
18.3
3
86
10
57
67
0
32
0
0.91
46808--46905
33
3.0
33
86
0
133
19
35
30
14
1.91
78322--78397
36
2.1
36
100
0
152
26
7
2
63
1.35
80359--80462
39
2.6
39
86
3
145
43
11
18
26
1.84
81711--81771
8
7.5
8
81
3
68
49
14
1
34
1.54
81731--81769
4
9.8
4
88
0
60
48
20
2
28
1.62
82162--82227
33
2.0
33
81
3
78
24
13
10
51
1.72

Tables:   1

The End!