Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012461.1 Corchorus capsularis cultivar CVL-1 contig12482, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35104

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
447--666
120
1.8
120
89
3
345
25
21
14
38
1.92
4364--4436
25
3.1
25
62
18
66
15
19
34
31
1.92
13962--14185
48
4.9
47
63
19
125
28
45
7
19
1.76
13916--14185
90
3.0
89
88
1
400
28
44
6
20
1.75
14777--14806
13
2.3
13
100
0
60
86
0
13
0
0.57
21015--21056
17
2.5
17
92
0
66
83
2
2
11
0.84
21015--21056
8
5.0
8
86
11
57
83
2
2
11
0.84
27986--28038
6
8.7
6
91
4
70
0
0
20
79
0.74
27980--28038
12
4.8
12
85
4
73
0
0
20
79
0.73
27980--28030
19
2.7
19
84
3
68
0
0
19
80
0.71
27973--28036
3
21.7
3
80
6
60
1
0
21
76
0.87
27973--28038
25
2.6
25
83
4
89
1
0
21
77
0.85
28550--28640
42
2.2
41
84
9
121
28
32
14
24
1.94
34371--34404
2
17.0
2
87
0
50
50
5
0
44
1.26

Tables:   1

The End!