Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012464.1 Corchorus capsularis cultivar CVL-1 contig12485, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  152759

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--1658
309
5.2
311
86
6
2171
34
15
16
34
1.90
1--1658
325
5.2
315
86
5
2221
34
15
16
34
1.90
1667--4062
321
7.5
321
84
6
2919
33
14
17
35
1.89
3975--4146
84
2.0
86
92
4
287
33
8
22
35
1.85
4784--5850
323
3.3
322
79
6
1050
33
13
16
36
1.88
6491--6521
13
2.4
13
94
0
53
41
0
0
58
0.98
19123--19168
11
3.9
11
88
11
65
0
4
8
86
0.68
20126--20157
2
16.0
2
100
0
64
50
0
0
50
1.00
29547--29581
11
3.3
11
88
8
54
0
14
0
85
0.59
29547--29581
16
2.2
16
94
0
61
0
14
0
85
0.59
34383--34435
13
4.1
13
78
7
54
62
1
3
32
1.24
34898--35643
373
2.0
374
95
0
1350
23
21
19
35
1.96
45384--45420
18
2.1
18
100
0
74
21
16
16
45
1.84
57216--57241
6
4.3
6
100
0
52
30
15
34
19
1.93
60260--60298
2
19.5
2
100
0
78
0
48
0
51
1.00
70972--71306
132
2.5
132
77
6
338
24
21
25
28
1.99
77621--77680
31
1.9
31
90
6
95
41
15
13
30
1.85
79921--80029
54
2.0
54
100
0
218
25
22
22
30
1.99
89090--89124
2
17.5
2
100
0
70
51
0
0
48
1.00
90081--90107
6
4.5
6
100
0
54
33
14
37
14
1.88
90282--90312
2
15.5
2
100
0
62
48
0
0
51
1.00
121793--121867
15
4.9
15
74
11
71
30
16
26
26
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
121782--121867
31
2.8
29
78
16
84
32
15
27
24
1.95
121777--121875
31
3.2
30
71
17
78
30
17
24
28
1.97
122321--122386
24
2.6
24
81
13
71
50
13
12
24
1.76
139331--139454
41
3.0
41
100
0
248
20
16
26
36
1.94
139487--139514
14
2.0
14
100
0
56
28
14
14
42
1.84
139729--139774
17
2.6
18
89
6
67
32
4
10
52
1.56
141314--141358
21
2.1
21
88
8
65
55
11
33
0
1.35
141533--141780
129
1.9
129
90
1
399
35
15
25
23
1.94
150356--150381
3
8.7
3
100
0
52
0
30
0
69
0.89
150348--150400
14
3.8
14
82
7
54
0
20
0
79
0.74

Tables:   1

The End!