Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012468.1 Corchorus capsularis cultivar CVL-1 contig12489, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  115651

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3417--3442
2
13.0
2
100
0
52
50
0
0
50
1.00
18311--18343
1
33.0
1
100
0
66
0
0
0
100
0.00
33989--34029
19
2.2
19
100
0
82
26
31
17
24
1.97
33932--34085
75
2.1
75
97
0
290
22
29
18
29
1.97
34008--34113
54
1.9
56
94
3
189
22
30
16
31
1.95
37949--38003
27
2.0
27
96
0
101
12
0
20
67
1.23
40101--40149
2
25.5
2
87
8
75
48
2
0
48
1.12
52699--52723
12
2.1
12
100
0
50
0
0
20
80
0.72
55078--55113
2
18.5
2
94
5
65
52
0
0
47
1.00
55872--55911
21
1.9
21
89
0
62
52
20
15
12
1.74
65257--65306
2
26.5
2
77
18
54
46
2
0
52
1.12
66901--66933
15
2.3
15
89
5
50
24
36
6
33
1.80
72430--72456
14
1.9
14
100
0
54
66
0
11
22
1.22
72654--72692
19
2.1
19
100
0
78
25
10
20
43
1.83
78457--78481
12
2.1
12
100
0
50
24
16
24
36
1.94
80329--80399
32
2.2
32
82
0
88
29
23
22
23
1.99
80450--80529
30
2.7
30
75
5
83
52
11
17
18
1.74
86400--86428
14
2.1
14
100
0
58
0
0
6
93
0.36
91811--91835
12
2.1
12
100
0
50
16
24
28
32
1.96
96946--96989
3
15.0
3
88
4
54
36
4
0
59
1.18
96952--96989
14
2.6
14
91
4
58
36
5
0
57
1.21
97396--97445
26
1.9
26
95
0
91
28
10
12
50
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97909--102819
333
14.9
333
88
5
7261
34
16
16
32
1.91
103116--103641
261
2.0
264
96
1
968
36
15
14
32
1.89
102820--103975
594
1.9
598
94
0
2023
35
16
15
32
1.90
103380--104381
334
3.0
333
96
0
1848
34
16
16
31
1.92
104382--105662
335
3.9
333
87
6
1941
34
16
16
32
1.92
106751--108414
333
5.0
333
94
1
2745
35
16
16
31
1.91
109361--109405
23
2.0
22
91
4
72
24
44
4
26
1.72
112451--112678
116
2.0
115
93
2
395
44
16
15
23
1.86
113534--113584
2
25.5
2
100
0
102
0
0
49
50
1.00

Tables:   1

The End!