Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012469.1 Corchorus capsularis cultivar CVL-1 contig12490, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55077

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
495--556
31
2.0
31
87
9
90
30
6
6
56
1.50
13879--13963
30
2.8
30
76
3
73
52
34
2
10
1.49
26722--26907
95
2.0
91
88
6
275
47
17
10
25
1.79
26722--26907
46
4.0
46
88
4
275
47
17
10
25
1.79
27584--27615
14
2.2
15
94
5
57
28
9
12
50
1.71
28359--28388
13
2.3
13
94
0
51
73
0
23
3
0.98
33695--33734
2
20.0
2
100
0
80
50
0
0
50
1.00
43664--43727
30
2.1
30
85
5
85
28
7
4
59
1.46
44913--44961
24
2.1
22
85
7
62
14
44
2
38
1.56
53846--53870
13
1.9
13
100
0
50
0
20
0
80
0.72
54848--54887
20
2.0
21
90
5
64
30
17
15
37
1.90

Tables:   1

The End!