Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012470.1 Corchorus capsularis cultivar CVL-1 contig12491, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98227

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--29
1
29.0
1
100
0
58
100
0
0
0
0.00
6174--6199
1
26.0
1
100
0
52
100
0
0
0
0.00
11176--11218
3
14.3
3
100
0
86
67
0
0
32
0.91
37914--38052
36
3.8
37
72
15
146
30
22
20
25
1.98
37931--38075
72
2.0
71
97
1
272
33
23
21
22
1.98
40211--40236
6
4.3
6
100
0
52
34
19
30
15
1.93
45328--45353
2
13.0
2
100
0
52
0
0
50
50
1.00
51735--51789
27
2.0
27
96
0
101
29
21
7
41
1.80
72938--72992
17
3.2
17
97
0
101
34
16
23
25
1.95
73278--73326
25
2.1
25
81
11
59
36
0
18
44
1.50
74412--74467
29
1.9
29
85
0
76
44
3
23
28
1.70
75148--75185
20
1.9
20
88
0
58
21
39
7
31
1.82
82722--82773
2
26.0
2
84
0
68
1
42
5
50
1.37
88231--88285
2
27.5
2
88
0
83
47
3
1
47
1.30
88316--88341
2
13.0
2
100
0
52
50
0
0
50
1.00
90109--90141
7
4.7
7
100
0
66
27
15
30
27
1.96
92018--92081
24
2.6
25
75
7
69
64
3
0
32
1.10
92173--92221
25
2.0
25
84
7
66
40
2
4
53
1.32
92157--92326
93
1.8
93
83
7
229
35
8
4
51
1.53
92306--92378
27
2.6
28
78
10
78
39
5
2
52
1.39
92599--94136
629
2.4
620
79
8
1566
33
14
16
34
1.90
94859--98227
333
10.1
334
87
3
4383
34
17
15
31
1.92

Tables:   1

The End!