Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012471.1 Corchorus capsularis cultivar CVL-1 contig12492, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11793
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.33


Found at i:7 original size:2 final size:2

Alignment explanation


    Indices: 1--26  Score: 52
    Period size: 2  Copynumber: 13.0  Consensus size: 2

                                                  
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT

         27 TTTTCTTAAA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   24  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Found at i:4519 original size:32 final size:32

Alignment explanation


    Indices: 4442--4512  Score: 88
    Period size: 32  Copynumber: 2.2  Consensus size: 32

       4432 TTAAGTATGG

                   *   *        *    *     *
       4442 AAACGCCATTAAATAGCGGCGTCTATAGAACT
          1 AAACGCCCTTATATAGCGGCATCTAAAGAACA

               *                            
       4474 AAATGCCCTTATATAGCGGCATCTAAAGAACA
          1 AAACGCCCTTATATAGCGGCATCTAAAGAACA

                   
       4506 AAACGCC
          1 AAACGCC

       4513 GCTATATTTA


Statistics
Matches: 32,  Mismatches: 7, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  32   32  1.00

ACGTcount: A:0.39, C:0.24, G:0.17, T:0.20


Consensus pattern (32 bp):   
AAACGCCCTTATATAGCGGCATCTAAAGAACA
Done.