Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012476.1 Corchorus capsularis cultivar CVL-1 contig12497, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12940

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--79
33
2.4
33
83
12
92
27
8
22
40
1.84
70--178
33
3.3
33
96
0
200
26
11
18
44
1.83
1668--1945
142
2.0
142
87
5
402
29
18
20
32
1.96
4516--4547
2
16.0
2
93
0
55
46
0
3
50
1.17
9500--9672
36
5.0
35
71
11
115
40
22
16
20
1.91
9610--9700
36
2.5
36
85
5
121
37
26
15
20
1.93
9697--10252
70
7.9
70
87
2
747
37
20
18
22
1.94
9697--10252
211
2.6
211
89
2
839
37
20
18
22
1.94
10125--10252
71
1.9
63
94
0
157
37
21
18
22
1.94
10234--10735
177
2.8
179
94
0
846
39
24
17
18
1.92
10241--10812
35
16.2
35
79
2
527
40
23
18
17
1.91
10871--10928
25
2.3
25
81
0
71
39
15
25
18
1.91
10894--11046
64
2.4
65
82
3
182
40
19
19
20
1.92
10894--11046
35
4.8
31
72
15
123
40
19
19
20
1.92
12019--12060
8
4.9
9
88
11
54
0
19
0
80
0.70
12018--12063
5
10.0
5
90
4
55
0
19
0
80
0.71
12364--12415
27
2.0
27
88
3
79
13
19
0
67
1.23
12736--12849
60
1.9
60
82
7
142
33
20
3
42
1.69
12833--12868
12
3.1
12
92
8
65
33
19
8
38
1.82

Tables:   1

The End!