Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012479.1 Corchorus capsularis cultivar CVL-1 contig12500, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37314

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
506--606
33
3.1
33
85
5
125
8
25
42
22
1.83
543--683
33
4.3
33
84
5
160
8
28
41
21
1.83
8335--8383
21
2.3
21
85
0
62
10
32
28
28
1.90
8220--8483
99
2.7
99
89
3
372
12
32
30
23
1.92
15096--15132
18
2.1
18
94
0
65
13
5
5
75
1.15
17120--17424
41
7.4
41
95
1
524
41
8
19
30
1.82
17422--18072
37
17.3
37
77
11
415
44
11
19
24
1.84
17706--17904
36
5.0
41
71
17
170
45
13
19
21
1.84
17669--18107
78
5.8
78
80
8
362
45
11
19
23
1.83
18084--18197
37
3.2
37
80
8
123
40
9
22
27
1.85
18189--18378
36
5.2
36
77
10
181
43
10
19
26
1.82
18189--18416
73
3.1
73
86
3
273
45
10
18
25
1.81
20654--20760
33
3.2
32
83
12
121
6
28
39
25
1.81
26042--26074
5
6.6
5
90
10
50
21
0
0
78
0.75
26148--26181
8
4.1
8
85
7
50
23
2
14
58
1.50
27160--27256
33
2.9
32
83
3
113
10
29
36
23
1.88
32097--32428
51
6.5
51
75
6
237
43
8
15
32
1.77

Tables:   1

The End!