Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012484.1 Corchorus capsularis cultivar CVL-1 contig12505, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67468

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8456--8523
34
2.1
34
83
5
86
30
2
10
55
1.48
11429--11462
16
2.2
16
89
5
52
29
2
8
58
1.43
13700--13727
2
14.0
2
100
0
56
50
0
0
50
1.00
15452--15476
12
2.1
12
100
0
50
32
8
8
52
1.60
15565--15598
12
2.8
12
90
0
50
58
0
0
41
0.98
17706--17730
6
4.2
6
100
0
50
0
0
32
68
0.90
17984--18089
16
6.7
16
81
1
106
51
31
12
4
1.59
17999--18104
16
6.6
16
82
0
131
51
32
12
3
1.57
17978--18089
32
3.5
32
86
1
127
50
31
12
5
1.62
17999--18104
48
2.2
48
94
0
185
51
32
12
3
1.57
18257--18316
15
3.9
15
80
6
66
40
35
8
16
1.79
18250--18325
31
2.4
32
95
2
136
39
36
10
13
1.79
23515--23666
72
2.1
73
85
6
211
24
8
23
43
1.81
26348--26386
3
13.0
3
100
0
78
33
0
0
66
0.92
26539--26565
13
2.1
13
100
0
54
44
14
0
40
1.46
26688--26724
19
2.0
19
89
5
58
64
0
2
32
1.07
30447--30614
33
5.3
33
95
2
249
43
20
10
25
1.84
30447--30647
66
3.1
66
85
5
218
42
20
10
26
1.84
30639--30741
33
3.2
33
83
1
136
45
20
9
24
1.81
32214--32244
8
3.9
8
95
0
53
12
0
0
87
0.55
33880--33954
30
2.5
30
84
0
96
13
29
30
26
1.94
35538--35573
19
1.9
18
88
5
54
33
22
2
41
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35736--35774
20
1.9
21
84
5
53
56
2
20
20
1.54
41551--41662
33
3.4
33
91
0
170
25
41
22
10
1.85
42675--42700
12
2.2
12
100
0
52
92
0
0
7
0.39
44158--44199
21
2.0
21
90
0
66
21
30
30
16
1.95
44179--44318
33
4.2
33
85
1
149
21
40
27
10
1.85
46819--46911
33
2.8
33
83
0
114
27
10
18
43
1.83
48757--48796
21
1.9
21
100
0
80
20
27
35
17
1.95
48778--48915
33
4.2
33
87
1
163
21
41
27
9
1.84
51700--51731
11
2.9
11
90
0
55
43
18
0
37
1.51
56793--56822
13
2.2
14
94
5
53
53
10
6
30
1.60
58285--58323
20
1.9
21
84
5
53
56
2
20
20
1.54
60526--60559
12
2.8
12
100
0
68
26
5
5
61
1.42
60450--60656
109
1.9
109
100
0
414
33
13
14
38
1.85
60821--60854
11
3.2
10
84
15
50
29
2
17
50
1.61
61754--61795
21
2.0
21
100
0
84
33
33
4
28
1.78
62762--62802
20
2.0
20
95
0
73
48
14
12
24
1.78
62817--62852
2
18.5
2
94
5
65
50
0
0
50
1.00

Tables:   1

The End!