Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012489.1 Corchorus capsularis cultivar CVL-1 contig12510, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42319

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2--1226
159
7.7
159
86
2
1503
28
23
21
26
1.99
4420--4453
17
2.0
17
100
0
68
41
11
17
29
1.85
9572--9596
2
12.5
2
100
0
50
52
0
0
48
1.00
9616--9915
110
2.7
109
90
4
444
30
16
21
32
1.95
9901--9940
18
2.2
18
100
0
80
22
25
22
30
1.99
10210--10326
46
2.5
46
93
2
191
27
24
17
29
1.98
10378--10463
46
1.9
44
81
11
104
25
20
19
33
1.97
11457--11544
36
2.4
36
80
0
95
36
17
22
23
1.94
11538--11612
24
3.1
24
94
0
123
33
20
30
16
1.94
14443--14471
14
2.1
14
100
0
58
44
20
0
34
1.52
18006--18066
29
2.1
29
84
0
77
21
29
16
32
1.95
19758--19816
31
1.9
30
86
10
84
32
0
5
62
1.17
19873--19961
39
2.4
37
80
15
103
34
0
8
56
1.31
20003--20037
15
2.5
14
90
9
54
34
0
5
60
1.21
20074--20103
16
1.9
15
93
6
51
40
3
0
56
1.16
24637--24670
17
1.9
18
94
5
61
61
8
0
29
1.26
27150--27181
15
2.1
15
94
0
55
34
6
6
53
1.51
28672--28733
24
2.6
23
73
14
63
29
12
0
58
1.35
29506--29567
24
2.6
23
70
14
54
30
11
0
58
1.33
27729--30314
822
3.1
824
88
5
3780
32
13
17
36
1.89
33390--33492
21
4.9
21
80
8
104
22
21
4
51
1.66
33453--33529
35
2.1
37
90
4
122
23
16
5
54
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33486--33731
22
9.7
26
77
13
171
20
19
3
56
1.57
33486--33732
27
9.7
27
77
16
146
20
19
3
56
1.57
33509--33731
53
4.4
51
76
16
178
20
19
3
56
1.57
33628--33731
55
1.9
54
88
5
156
23
19
3
53
1.61
33716--33760
21
2.1
21
83
0
54
26
22
2
48
1.62
33722--34026
36
8.5
36
88
3
418
20
22
2
54
1.58
33852--33993
7
19.7
7
70
16
76
20
22
2
54
1.54
33852--33977
22
6.5
21
66
28
66
20
22
2
54
1.56
34116--34320
32
6.1
32
74
16
166
20
24
3
51
1.64
34092--34229
72
1.9
72
85
2
188
20
26
3
50
1.65
34174--34319
65
2.3
64
80
7
163
19
24
4
50
1.67
38804--38847
22
2.0
22
95
0
79
56
13
20
9
1.64

Tables:   1

The End!