Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012491.1 Corchorus capsularis cultivar CVL-1 contig12512, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51848

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7194--7233
1
40.0
1
94
0
71
2
0
0
97
0.17
7194--7233
21
1.9
21
100
0
80
2
0
0
97
0.17
16031--16062
14
2.3
14
100
0
64
93
6
0
0
0.34
19868--19932
33
2.0
32
96
3
121
6
36
3
53
1.41
21210--21251
19
2.2
19
86
0
57
50
30
11
7
1.66
25225--25265
17
2.5
17
88
4
57
46
4
14
34
1.66
28635--28671
19
2.0
18
89
5
56
37
2
24
35
1.70
31985--32389
214
1.9
214
99
0
801
34
14
20
30
1.93
32444--32473
2
15.0
2
100
0
60
50
0
0
50
1.00
33980--34588
35
17.7
34
83
10
667
32
19
10
38
1.85
33980--34588
107
5.9
103
88
5
799
32
19
10
38
1.85
34445--34491
14
3.1
15
75
12
51
31
21
10
36
1.88
38754--38793
2
20.5
2
84
5
55
47
5
0
47
1.24
47453--47512
24
2.5
24
89
2
95
50
20
10
20
1.76
47787--47828
19
2.3
18
84
8
57
35
2
0
61
1.09
48570--48618
16
3.1
16
93
0
80
53
34
10
2
1.47
48576--48635
16
3.8
16
88
0
84
55
31
10
3
1.50
48797--48873
32
2.4
32
88
0
118
37
35
11
15
1.84
48797--48891
16
5.8
17
69
12
74
36
35
12
14
1.85
48857--48890
17
2.1
17
94
5
61
32
41
14
11
1.82

Tables:   1

The End!