Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012494.1 Corchorus capsularis cultivar CVL-1 contig12515, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107948

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
985--1016
13
2.3
15
89
10
50
59
3
9
28
1.44
5799--5852
3
18.0
3
92
0
90
64
1
1
31
1.14
6499--6552
27
2.0
27
92
0
90
18
12
38
29
1.88
7933--8009
38
2.0
38
94
0
136
36
16
11
35
1.86
13470--13689
34
6.5
34
74
15
186
33
16
15
34
1.91
13437--13619
31
5.6
31
75
13
172
32
18
14
34
1.91
13437--13654
65
3.3
65
91
1
337
32
17
15
34
1.91
13614--13694
40
2.0
40
97
0
153
33
17
17
32
1.93
13967--14039
38
1.9
38
97
0
137
35
19
12
32
1.89
18945--19240
109
2.7
109
89
4
441
49
1
11
37
1.48
35818--36134
158
2.0
159
93
1
539
28
14
18
38
1.90
37452--37485
2
17.0
2
88
11
52
50
2
0
47
1.16
44651--44726
32
2.3
32
93
2
125
27
9
11
51
1.69
57342--57367
3
8.7
3
100
0
52
34
0
65
0
0.93
60430--60487
27
2.1
27
87
0
80
17
18
15
48
1.82
63404--63495
25
3.6
25
85
2
130
30
25
21
22
1.99
85032--85068
18
2.0
18
89
5
56
8
18
0
72
1.08
85951--86322
138
2.8
134
90
2
561
27
11
21
38
1.88
87966--88034
36
1.9
36
88
5
104
43
5
2
47
1.42
88024--88070
20
2.4
20
79
10
53
44
0
2
53
1.12
89263--89475
107
2.0
107
97
0
401
33
18
12
34
1.89
89538--89591
26
2.1
26
93
6
92
20
11
7
61
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93024--93074
26
2.0
26
96
3
95
15
11
11
60
1.58
93467--93670
107
1.9
106
88
1
309
39
10
7
42
1.67
94845--94909
31
2.1
31
100
0
130
20
15
23
41
1.89
99020--99056
19
2.0
18
94
5
65
16
16
24
43
1.87
102685--102719
16
2.2
16
90
5
54
17
0
0
82
0.66
106915--107001
43
2.0
45
88
4
133
32
10
13
43
1.78

Tables:   1

The End!