genome.fa.s12495.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012495.1 Corchorus capsularis cultivar CVL-1 contig12516, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51858

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3160--3210	19	2.6	20	93	3	86	56	9	13	19	1.65
5339--5408	23	2.7	26	74	17	74	48	15	4	31	1.65
5630--5698	22	3.1	21	79	8	66	34	13	10	42	1.77
5703--5751	22	2.2	22	85	7	64	30	14	2	53	1.52
5901--6087	22	8.8	22	72	14	90	37	17	9	36	1.81
5912--6034	23	5.6	22	80	9	119	39	13	10	36	1.80
8632--8698	31	2.1	32	89	8	102	14	31	20	32	1.93
8623--8698	31	2.4	31	84	6	100	17	30	21	31	1.96
11951--11982	8	4.0	8	91	0	55	25	34	0	40	1.56
12493--13388	440	2.0	441	85	4	1235	30	13	13	42	1.82
13461--13696	120	2.0	117	88	2	346	36	19	10	33	1.87
14366--14483	33	3.6	32	72	12	89	13	31	37	17	1.89
14495--14539	22	2.0	22	91	8	74	20	37	28	13	1.90
14760--14797	20	1.9	20	94	0	67	26	7	42	23	1.81
16413--16489	30	2.5	30	85	2	109	32	12	18	36	1.89
20889--20936	18	2.5	19	80	6	53	79	0	4	16	0.89
20992--21024	17	1.9	17	100	0	66	9	36	6	48	1.60
21308--21375	29	2.3	29	87	0	100	14	10	26	48	1.76
21826--21859	16	2.1	16	100	0	68	29	20	23	26	1.99
25148--25211	27	2.4	27	78	0	83	34	35	10	18	1.86
26729--26762	2	17.0	2	93	0	59	52	0	0	47	1.00
26784--26811	7	4.0	7	100	0	56	57	14	0	28	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26807--27232	212	2.0	211	96	0	780	29	21	13	35	1.91
28355--28381	2	13.5	2	100	0	54	48	0	0	51	1.00
31743--32111	22	16.4	22	70	12	167	34	8	19	37	1.82
31982--32133	66	2.3	66	87	1	205	31	12	16	39	1.86
31899--32133	22	10.7	22	74	5	179	31	11	17	40	1.84
50914--50965	27	2.0	26	82	17	63	32	5	3	57	1.40

Tables:   1

The End!