genome.fa.s12497.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012497.1 Corchorus capsularis cultivar CVL-1 contig12518, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78888

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4725--4790	31	2.1	32	88	5	100	48	4	18	28	1.67
4981--5045	21	2.9	22	81	11	69	44	10	10	33	1.74
4982--5111	22	5.8	23	75	8	90	40	10	13	35	1.79
5008--5201	22	8.9	21	71	9	92	40	9	14	35	1.79
5007--5196	44	4.3	44	76	6	165	41	10	13	34	1.78
5027--5155	66	2.0	66	81	3	152	39	10	14	34	1.81
5298--5416	22	5.4	22	70	15	75	42	9	12	36	1.75
5771--5886	50	2.6	41	72	21	106	43	9	7	39	1.66
6553--6610	17	3.5	17	73	4	55	36	20	15	27	1.93
6538--6594	16	3.5	16	78	4	69	42	21	8	28	1.82
6538--6610	33	2.2	33	90	0	110	38	20	12	28	1.89
6601--6674	31	2.4	31	88	2	105	27	17	24	31	1.97
8762--8904	50	3.2	41	75	18	126	43	10	6	39	1.64
9367--9570	22	9.2	22	69	7	90	40	10	15	33	1.81
10570--10970	68	6.0	67	78	6	348	44	14	18	21	1.86
10577--10825	134	1.9	134	81	6	308	43	14	18	23	1.87
10646--10970	135	2.4	134	80	7	329	45	14	18	20	1.85
16239--16270	16	1.9	17	93	6	57	28	0	0	71	0.86
17542--17586	23	2.0	22	91	4	72	48	8	4	37	1.55
18062--18096	17	2.1	17	94	0	61	8	11	25	54	1.64
18062--18097	16	2.2	17	90	5	56	8	13	25	52	1.68
23882--23926	19	2.4	19	80	0	54	48	17	4	28	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23894--23937	19	2.3	19	88	0	61	43	13	4	38	1.65
29165--29305	37	3.9	37	76	15	161	46	6	18	28	1.73
29046--29294	70	3.6	70	88	9	386	48	6	17	27	1.72
29046--29289	134	1.8	135	93	1	429	48	6	17	27	1.72
29165--29416	40	6.6	39	70	22	164	46	5	20	26	1.73
29227--29441	80	2.7	79	83	5	258	47	5	20	25	1.72
29235--29441	40	5.2	40	73	8	147	47	5	20	26	1.73
29619--29866	35	6.9	35	76	12	227	53	3	23	19	1.59
29625--29725	7	14.1	7	70	8	60	53	2	25	17	1.58
29696--29735	21	1.9	21	84	0	53	57	2	20	20	1.52
29755--29797	21	2.0	21	86	4	59	53	2	20	23	1.57
29922--29992	21	3.3	22	80	5	83	50	4	22	22	1.66
31448--31518	31	2.3	31	87	7	99	29	19	2	47	1.64
31623--31697	38	2.1	35	87	7	105	13	17	12	57	1.65
31830--31872	19	2.1	21	84	16	56	27	6	2	62	1.33
32031--32117	22	3.9	23	72	13	83	34	10	16	39	1.82
36078--36145	26	2.6	26	97	0	127	54	11	0	33	1.37
36078--36149	11	5.4	15	69	25	63	55	12	0	31	1.37
37378--38842	494	3.0	492	91	4	2475	46	18	13	21	1.83
40372--40475	39	2.7	38	82	14	124	19	7	27	45	1.77
41629--41679	5	10.6	5	83	8	52	56	5	19	17	1.61
43574--43665	33	2.8	32	87	8	123	9	28	41	20	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48621--48650	5	5.8	5	92	7	51	20	0	0	80	0.72
49693--49788	33	2.9	32	85	3	120	10	27	40	21	1.86
50350--50718	131	2.8	131	91	1	580	49	1	12	36	1.49
57252--57322	30	2.3	31	90	7	108	25	9	18	46	1.79
59428--59480	21	2.5	21	100	0	106	13	30	47	9	1.74
61500--61610	58	1.9	58	89	7	172	23	7	18	51	1.70
61559--61799	120	2.0	120	100	0	482	26	9	18	46	1.79
62169--62301	67	2.0	67	95	0	239	27	6	10	55	1.59
62850--62894	21	2.1	21	87	0	63	31	17	22	28	1.97
63870--64005	68	2.0	68	97	0	254	25	7	10	56	1.58
63978--64054	38	2.0	38	100	0	154	29	5	12	51	1.62
63993--64054	19	3.3	19	64	8	54	27	4	14	53	1.61
70491--70560	34	2.1	34	97	0	131	32	10	20	37	1.85

Tables:   1

The End!