Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012504.1 Corchorus capsularis cultivar CVL-1 contig12525, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  168220

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
470--534
27
2.3
28
89
7
105
55
7
29
7
1.56
8018--8044
2
13.5
2
100
0
54
48
0
0
51
1.00
9667--9692
2
13.0
2
100
0
52
50
0
0
50
1.00
21553--21620
33
2.0
34
91
2
111
25
14
11
48
1.78
34429--34489
21
2.9
21
82
0
77
40
14
9
34
1.79
36503--36565
31
2.0
31
100
0
126
26
41
6
25
1.79
37940--37974
17
2.1
17
100
0
70
42
28
5
22
1.76
38353--38404
26
2.0
26
92
0
86
44
9
21
25
1.82
44544--44651
39
2.9
38
87
6
152
30
12
10
46
1.75
44974--45029
12
4.8
12
75
14
55
46
1
1
50
1.22
45002--45059
18
3.2
18
74
13
57
46
5
0
48
1.24
44972--45059
24
3.9
23
73
23
80
45
3
1
50
1.26
45045--45141
31
3.1
31
72
16
99
37
11
8
43
1.71
49971--50245
49
5.6
48
87
4
356
32
17
28
22
1.96
50011--50245
97
2.4
97
90
2
366
32
17
27
22
1.96
52068--52098
7
4.4
7
95
0
53
48
0
22
29
1.51
52874--52906
15
2.2
15
94
0
57
6
9
9
75
1.18
52984--53014
16
1.9
16
93
0
53
6
9
9
74
1.23
54264--54318
28
1.9
29
96
3
103
41
14
16
27
1.87
56849--56912
29
2.1
30
85
5
85
37
10
20
31
1.87
57779--57810
16
2.0
16
93
0
55
15
18
18
46
1.84
58648--58702
18
3.1
18
65
19
51
36
21
12
29
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58629--58702
36
2.1
36
94
0
130
36
22
10
29
1.89
61534--61563
9
3.3
9
100
0
60
13
23
23
40
1.90
70539--70783
86
2.9
85
86
7
302
35
16
4
43
1.69
70575--70805
86
2.7
86
89
2
320
35
17
5
41
1.72
72867--72903
14
2.5
16
83
16
53
81
2
16
0
0.81
73297--73339
6
7.5
6
84
10
63
0
13
2
83
0.74
73864--73915
26
2.0
26
96
0
95
38
32
7
21
1.82
87954--87989
6
6.0
6
90
0
54
33
0
50
16
1.46
90525--90616
45
2.0
45
100
0
184
42
17
4
35
1.69
100936--101192
127
2.0
127
90
0
408
19
9
34
36
1.84
102219--102252
6
5.7
6
96
0
59
0
20
0
79
0.73
106864--106926
32
1.9
33
93
3
110
22
20
34
22
1.96
111693--111751
5
11.4
5
81
13
57
0
0
15
84
0.62
111696--111752
23
2.4
24
88
8
82
0
0
14
85
0.59
111696--111752
8
7.2
8
84
11
82
0
0
14
85
0.59
117855--117987
60
2.2
60
91
2
214
30
17
16
36
1.92
120223--120391
87
1.9
89
84
4
227
43
14
9
32
1.77
122813--123228
208
2.0
208
97
0
787
30
16
23
29
1.96
129049--129184
43
3.1
43
65
23
104
24
15
19
41
1.90
129160--129201
21
1.9
22
85
9
59
16
19
23
40
1.91
128991--129288
88
3.4
86
86
2
384
24
14
21
39
1.91
129501--129614
43
2.7
42
82
8
124
21
8
27
42
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
129555--129614
22
2.8
22
76
2
68
21
8
30
40
1.83
129555--129622
22
3.1
21
73
10
66
23
8
27
39
1.84
129621--129898
84
3.3
84
87
3
353
23
14
20
41
1.88
129857--129898
21
2.0
22
90
4
68
21
11
26
40
1.88
130290--130344
15
3.5
15
72
13
56
40
12
3
43
1.60
144869--145508
66
9.7
66
85
6
768
22
31
19
26
1.97
144860--145511
198
3.3
198
85
4
890
22
31
19
26
1.98
150041--150147
54
2.0
53
90
1
169
29
27
8
34
1.86
159843--159878
2
18.5
2
94
5
65
50
0
0
50
1.00
162278--162387
55
2.0
55
90
0
175
27
15
25
31
1.96
163436--163478
16
2.8
16
92
3
70
67
4
0
27
1.10
167262--167326
30
2.1
33
88
8
100
30
7
10
50
1.65

Tables:   1

The End!