Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012506.1 Corchorus capsularis cultivar CVL-1 contig12527, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58497

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
800--904
31
3.4
31
93
0
174
20
14
30
34
1.93
5985--6011
3
9.0
3
100
0
54
0
33
0
66
0.92
12218--12286
22
3.1
22
87
0
93
37
15
11
34
1.84
12275--12354
23
3.5
23
81
1
90
37
12
6
43
1.68
12253--12354
45
2.3
46
84
3
127
36
13
8
41
1.76
12229--12410
22
8.5
21
68
17
81
35
14
9
40
1.79
12481--12518
20
2.0
20
94
5
69
28
18
10
42
1.83
12613--12762
22
6.9
22
71
10
74
35
14
10
40
1.79
12593--12756
87
1.9
87
81
5
197
34
14
9
41
1.78
12678--12863
22
8.5
22
74
11
143
33
15
10
41
1.80
12869--12921
22
2.5
21
78
9
54
37
15
7
39
1.75
12940--12998
22
2.7
22
82
10
75
37
16
8
37
1.80
13034--13195
22
7.4
22
79
6
141
39
19
9
32
1.83
13359--13401
19
2.2
20
84
16
54
62
2
6
27
1.33
13532--13607
38
2.1
35
87
7
107
59
13
14
13
1.62
13704--13770
31
2.1
32
83
10
93
46
4
16
32
1.67
13711--13776
31
2.1
31
88
5
98
46
4
19
28
1.69
14246--14333
33
2.7
33
82
3
117
18
34
34
13
1.90
14658--14697
13
3.1
13
100
0
80
45
25
15
15
1.84
15971--16004
8
4.2
8
96
0
59
11
41
38
8
1.73
28400--28473
30
2.4
31
81
2
78
29
18
20
31
1.97
29520--29722
103
2.0
102
90
0
316
22
6
27
44
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29930--29991
31
2.0
31
100
0
124
29
19
19
32
1.96
43223--43364
71
2.0
71
100
0
284
36
15
12
35
1.86
47140--47676
274
2.0
264
94
3
939
31
12
17
38
1.86
47728--47808
42
2.0
42
90
2
128
30
11
14
43
1.81
48836--48967
63
2.1
63
98
0
255
33
15
32
18
1.92
51109--51138
15
2.0
15
100
0
60
33
20
20
26
1.97
51295--51333
20
2.0
20
100
0
78
25
23
10
41
1.86

Tables:   1

The End!