Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012508.1 Corchorus capsularis cultivar CVL-1 contig12529, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67550

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
179--203
2
12.5
2
100
0
50
48
0
0
52
1.00
19145--19189
23
1.9
24
86
4
65
71
4
2
22
1.15
30356--30448
31
3.0
31
82
1
114
23
15
27
33
1.95
33984--34047
29
2.2
29
97
0
119
43
12
7
35
1.71
38178--38226
18
2.8
18
90
3
73
44
6
4
44
1.47
44112--44155
20
2.2
20
88
8
63
25
0
0
75
0.81
44112--44155
21
2.2
20
88
12
63
25
0
0
75
0.81
44112--44166
21
2.5
22
80
14
60
30
0
0
69
0.89
44111--44161
8
6.6
8
74
17
54
27
0
0
72
0.85
44178--44238
31
2.0
31
96
0
113
40
11
9
37
1.75
45330--45369
19
2.0
20
90
4
64
40
17
7
35
1.78
50416--50472
3
20.0
3
82
10
75
35
1
1
61
1.17
50416--50480
14
4.7
14
84
9
89
36
1
1
60
1.16
50415--50480
26
2.5
26
87
4
89
36
1
3
59
1.22
56966--57114
41
3.9
41
72
16
138
37
20
12
28
1.90
57081--57248
62
2.7
62
88
4
239
41
23
8
27
1.83
57935--57959
12
2.1
12
100
0
50
52
8
24
16
1.70
58231--58271
20
2.0
20
90
0
64
63
17
0
19
1.31
58451--58484
3
11.3
3
93
0
50
67
26
0
5
1.13
61120--61188
13
5.8
12
71
23
56
75
0
21
2
0.93
64735--64781
21
2.2
22
92
3
78
53
8
10
27
1.64
65062--65131
37
1.9
36
91
2
113
21
5
27
45
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65456--65490
2
17.5
2
100
0
70
51
0
0
48
1.00
66580--66620
21
2.0
20
90
4
64
60
7
9
21
1.52
67134--67177
23
1.9
23
86
9
63
38
15
0
45
1.47

Tables:   1

The End!