Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012511.1 Corchorus capsularis cultivar CVL-1 contig12532, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6726
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29


Found at i:2569 original size:5 final size:5

Alignment explanation


    Indices: 2551--2598  Score: 60
    Period size: 5  Copynumber: 9.4  Consensus size: 5

       2541 TTTAAAAAAC

                *                       *     *                      
       2551 TTCCC TTCCAT TTCCT TTCCT TTCAT TTCAT TTCCT TTCCT TTCCT TT
          1 TTCCT TTCC-T TTCCT TTCCT TTCCT TTCCT TTCCT TTCCT TTCCT TT

       2599 AATGATTTGA


Statistics
Matches: 39,  Mismatches: 3, Indels: 2
        0.89            0.07        0.05

Matches are distributed among these distances:
   5   35  0.90
   6    4  0.10

ACGTcount: A:0.06, C:0.35, G:0.00, T:0.58


Consensus pattern (5 bp):   
TTCCT

Done.