Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012514.1 Corchorus capsularis cultivar CVL-1 contig12535, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77177

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1346--1443
31
3.2
29
81
11
83
31
24
11
32
1.90
3309--3386
37
2.1
37
100
0
156
39
10
3
46
1.56
3317--3395
37
2.1
37
92
0
131
40
11
5
43
1.63
5787--5864
29
2.5
32
86
11
110
35
16
8
38
1.80
11661--11700
21
1.9
21
85
10
55
50
5
27
17
1.67
13747--13820
37
2.0
37
89
5
114
18
18
10
51
1.75
14842--14888
22
2.1
22
96
0
85
42
4
6
46
1.48
14842--14884
11
3.9
11
90
0
68
41
4
6
46
1.51
27177--27248
21
3.4
21
88
0
117
22
19
29
29
1.98
27313--27404
21
4.4
21
91
0
148
21
16
28
33
1.95
27130--27384
136
1.9
138
89
1
406
27
17
25
29
1.97
27413--27596
70
2.7
69
90
3
282
34
19
19
26
1.95
32273--32318
6
8.0
6
87
4
51
50
2
43
4
1.34
33877--33939
30
2.1
30
87
0
90
55
4
15
23
1.59
51606--51643
2
19.5
2
94
5
69
50
0
0
50
1.00
54400--54426
3
9.0
3
100
0
54
66
33
0
0
0.92
63211--63240
13
2.2
14
94
5
53
0
16
0
83
0.65
64706--64734
3
9.7
3
100
0
58
31
0
34
34
1.58
68978--69014
12
3.0
13
76
15
51
43
2
37
16
1.62
71164--72681
334
4.6
325
75
10
977
34
13
14
37
1.85
72781--72839
19
3.0
20
77
7
66
27
10
20
42
1.84

Tables:   1

The End!