Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012516.1 Corchorus capsularis cultivar CVL-1 contig12537, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84734

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
821--934
56
2.0
56
93
3
194
39
5
10
44
1.61
1210--1258
23
2.1
23
88
0
71
26
10
14
48
1.75
3328--3383
23
2.5
22
77
16
60
21
14
3
60
1.49
22248--22277
1
30.0
1
100
0
60
0
0
0
100
0.00
23525--23580
8
6.6
8
77
16
51
28
0
10
60
1.30
23524--23580
18
3.2
18
89
0
87
29
0
10
59
1.31
23510--23580
36
1.9
38
85
5
101
32
0
9
57
1.31
23694--23777
24
3.5
24
78
0
78
33
13
39
14
1.84
24195--24244
21
2.4
21
100
0
100
30
24
24
22
1.99
27645--27674
15
2.0
15
93
0
51
13
76
0
10
1.01
27646--27737
46
2.0
47
91
6
152
23
56
4
15
1.57
30339--30363
10
2.5
10
100
0
50
28
8
28
36
1.85
31280--31374
37
2.6
37
82
0
118
17
18
11
51
1.75
33403--33436
17
2.1
16
94
5
59
5
8
5
79
1.05
35541--35602
30
2.1
30
100
0
124
27
12
19
40
1.88
45252--45280
2
14.5
2
100
0
58
48
0
0
51
1.00
57128--57152
3
8.3
3
100
0
50
68
0
0
32
0.90
59218--59257
12
3.4
12
89
3
55
2
7
32
57
1.40
59224--59259
11
3.2
11
92
4
54
2
2
33
61
1.25
59224--59259
17
2.1
18
89
5
56
2
2
33
61
1.25
61242--61275
2
17.0
2
100
0
68
50
0
0
50
1.00
71252--71714
180
2.6
179
79
7
465
32
14
16
37
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
81618--81650
12
2.8
12
86
4
50
48
9
12
30
1.71
81617--81667
23
2.2
23
79
6
59
52
9
11
25
1.68
83509--83770
107
2.5
106
91
2
404
41
9
9
40
1.70

Tables:   1

The End!