Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012518.1 Corchorus capsularis cultivar CVL-1 contig12539, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68162

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
937--2234
431
3.0
431
85
6
1607
29
14
15
40
1.87
1453--2729
454
2.8
455
87
4
1713
29
14
15
40
1.86
8758--8791
12
2.7
13
90
4
52
20
11
8
58
1.59
8788--8814
6
4.5
6
100
0
54
29
0
14
55
1.40
14963--15017
3
18.3
3
100
0
110
67
0
0
32
0.91
16859--16894
10
3.6
10
96
0
63
41
22
5
30
1.76
18577--18632
12
4.6
12
95
4
103
25
23
16
35
1.94
18577--18632
25
2.3
24
96
3
103
25
23
16
35
1.94
19558--19633
32
2.6
27
74
18
80
51
21
13
14
1.76
22684--22721
18
2.2
17
90
4
58
44
0
2
52
1.14
22628--22721
35
2.6
38
77
18
108
46
0
4
48
1.21
22690--22732
18
2.4
18
80
7
52
48
2
4
44
1.36
26563--26732
79
2.1
79
97
1
322
37
14
21
27
1.92
26913--26950
19
2.0
19
94
0
67
15
18
23
42
1.89
35589--35628
13
3.1
13
85
0
53
45
15
15
25
1.84
36017--36124
41
2.7
41
83
7
134
36
16
14
32
1.90
41753--41792
13
3.1
13
85
0
53
45
17
15
22
1.85
42981--43017
18
2.1
18
100
0
74
51
21
10
16
1.74
44322--44652
175
1.9
175
92
0
563
24
16
16
41
1.88
44601--44709
54
2.0
54
92
0
182
32
11
15
40
1.84
45326--45361
18
2.0
18
94
0
63
27
30
11
30
1.91
45500--45580
39
2.0
39
88
4
117
43
16
9
30
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45428--45652
113
2.0
111
92
1
369
39
16
10
33
1.83
45539--45749
72
2.9
71
87
8
309
39
16
9
34
1.81
48594--48670
24
3.2
24
74
3
66
11
25
35
27
1.91
48653--48709
24
2.4
22
83
16
78
17
28
17
36
1.93
48663--48709
24
2.0
24
92
8
80
19
21
21
38
1.94
50791--50956
58
2.9
58
80
2
181
27
37
19
16
1.93
51008--51111
48
2.2
48
91
0
163
42
25
15
16
1.87
51075--51201
28
4.6
28
75
12
127
40
22
15
20
1.90
51859--52278
29
14.4
29
79
4
211
30
25
23
20
1.99
51859--52278
58
7.2
58
74
5
247
30
25
23
20
1.99
52046--52282
87
2.7
86
85
4
318
27
28
22
21
1.99
52405--52819
29
14.7
29
79
9
371
27
28
22
21
1.99
52405--52827
55
7.5
56
76
13
297
27
27
22
22
1.99
52733--52849
55
2.1
55
81
9
132
29
30
23
17
1.97
52941--53021
28
2.9
28
92
0
126
27
29
27
16
1.97
53174--53230
24
2.4
24
88
5
80
42
22
15
19
1.89
53223--53282
24
2.5
23
78
10
57
31
36
21
10
1.87
53916--53961
15
2.9
16
77
6
58
41
30
15
13
1.85
55553--55932
192
2.0
184
90
5
591
34
30
14
20
1.93
59352--59392
3
13.7
3
100
0
82
65
0
0
34
0.93

Tables:   1

The End!