Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001252.1 Corchorus capsularis cultivar CVL-1 contig01252, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2385
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39


Found at i:597 original size:13 final size:14

Alignment explanation


    Indices: 579--608  Score: 53
    Period size: 13  Copynumber: 2.2  Consensus size: 14

        569 AGATATTAAC

                          
        579 AAAAAAGAAAA-AA
          1 AAAAAAGAAAAGAA

                          
        592 AAAAAAGAAAAGAA
          1 AAAAAAGAAAAGAA

               
        606 AAA
          1 AAA

        609 TATATACTGT


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  13   11  0.69
  14    5  0.31

ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00


Consensus pattern (14 bp):   
AAAAAAGAAAAGAA

Found at i:2210 original size:25 final size:26

Alignment explanation


    Indices: 2176--2225  Score: 93
    Period size: 26  Copynumber: 2.0  Consensus size: 26

       2166 ATTCTTATTT

                                      
       2176 AAGGTTACT-AAAAATGCAGTTGTTC
          1 AAGGTTACTAAAAAATGCAGTTGTTC

                                     
       2201 AAGGTTACTAAAAAATGCAGTTGTT
          1 AAGGTTACTAAAAAATGCAGTTGTT

       2226 ATTAAGGGCT


Statistics
Matches: 24,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  25    9  0.38
  26   15  0.62

ACGTcount: A:0.38, C:0.10, G:0.20, T:0.32


Consensus pattern (26 bp):   
AAGGTTACTAAAAAATGCAGTTGTTC

Done.