genome.fa.s12520.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012520.1 Corchorus capsularis cultivar CVL-1 contig12541, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29079

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6673--6756	33	2.5	33	88	3	116	10	29	41	17	1.84
6683--6735	16	3.2	16	72	15	54	7	26	45	20	1.78
15634--15681	13	3.6	13	76	23	55	16	14	41	27	1.87
15617--15691	26	2.9	26	94	4	125	16	17	40	26	1.90
15631--15691	14	4.8	12	73	26	54	16	16	39	27	1.90
15794--15837	23	1.9	23	90	0	70	27	18	36	18	1.94
16311--16355	22	2.0	23	86	4	65	31	2	13	53	1.52
16726--16907	57	3.2	57	87	3	283	14	25	13	46	1.82
16945--17139	45	4.3	45	92	0	318	17	18	22	41	1.91
17776--18024	57	4.4	57	86	5	315	16	26	14	42	1.86
17743--18030	57	5.1	57	84	5	314	17	25	14	43	1.87
17743--18053	114	2.7	113	81	6	353	16	24	16	42	1.88
19716--20480	98	7.8	99	86	3	959	13	30	23	33	1.93
19716--20480	195	3.9	196	85	3	1033	13	30	23	33	1.93
19716--20480	293	2.6	292	90	1	1158	13	30	23	33	1.93
20421--20548	68	1.9	68	90	0	202	16	29	28	25	1.97
20226--20743	263	2.0	263	98	0	991	14	30	23	30	1.95
20489--21187	98	7.2	98	86	2	881	14	29	21	35	1.93
20128--20841	361	2.0	361	88	1	1074	14	30	23	31	1.94
20489--21187	195	3.6	194	85	3	902	14	29	21	35	1.93
21250--21342	21	4.4	21	72	12	82	15	20	19	45	1.86
21871--22224	123	2.8	123	81	2	402	14	27	27	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21871--22305	123	3.5	123	79	5	340	13	27	28	30	1.94
22688--22759	37	1.9	37	91	0	117	18	19	30	31	1.95
25159--25247	29	3.0	29	81	3	115	35	25	24	13	1.92
25544--25612	32	2.2	32	86	5	95	15	10	37	36	1.82
25569--25644	32	2.4	32	86	0	98	17	11	31	39	1.85
25847--25912	16	4.1	16	80	7	80	6	10	28	54	1.58

Tables:   1

The End!