Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012523.1 Corchorus capsularis cultivar CVL-1 contig12544, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83677

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10929--10964
1
36.0
1
100
0
72
100
0
0
0
0.00
19697--19762
31
2.2
30
84
10
82
43
12
22
21
1.85
24838--24878
13
2.8
16
71
21
52
48
17
2
31
1.60
27587--27619
2
16.5
2
93
0
57
45
0
3
51
1.16
27807--27883
40
1.9
40
86
5
111
27
12
16
42
1.85
39292--39325
2
17.0
2
100
0
68
50
0
0
50
1.00
46600--46624
2
12.5
2
100
0
50
48
0
0
52
1.00
49076--49107
2
16.0
2
100
0
64
50
0
0
50
1.00
54034--54106
36
2.0
36
100
0
146
35
35
5
23
1.78
55130--55163
2
17.0
2
100
0
68
50
0
0
50
1.00
63163--63198
18
1.9
19
88
5
56
80
2
16
0
0.83
63317--63353
3
12.3
3
100
0
74
0
32
0
67
0.91
66673--66756
42
2.0
42
95
0
150
29
15
25
29
1.96
71925--71969
21
2.1
21
84
8
56
57
13
20
8
1.62
80702--80728
2
13.5
2
100
0
54
51
0
0
48
1.00

Tables:   1

The End!