Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012524.1 Corchorus capsularis cultivar CVL-1 contig12545, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8623
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34


Found at i:1204 original size:1 final size:1

Alignment explanation


    Indices: 1198--1222  Score: 50
    Period size: 1  Copynumber: 25.0  Consensus size: 1

       1188 TATTATGTTT

                                     
       1198 AAAAAAAAAAAAAAAAAAAAAAAAA
          1 AAAAAAAAAAAAAAAAAAAAAAAAA

       1223 CTCAAACCGA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   1   24  1.00

ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00


Consensus pattern (1 bp):   
A

Found at i:5638 original size:10 final size:10

Alignment explanation


    Indices: 5623--5660  Score: 60
    Period size: 10  Copynumber: 3.9  Consensus size: 10

       5613 AACTAACTAA

                      
       5623 TCGGTTTTGG
          1 TCGGTTTTGG

                   *  
       5633 TCGGTTTCGG
          1 TCGGTTTTGG

                      
       5643 TCGGTTTT-G
          1 TCGGTTTTGG

                     
       5652 TCGGTTTTG
          1 TCGGTTTTG

       5661 ATTTATATTT


Statistics
Matches: 25,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
   9    9  0.36
  10   16  0.64

ACGTcount: A:0.00, C:0.13, G:0.37, T:0.50


Consensus pattern (10 bp):   
TCGGTTTTGG
Done.