Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01012525.1 Corchorus capsularis cultivar CVL-1 contig12546, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67882
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.34
Found at i:2930 original size:21 final size:21
Alignment explanation
Indices: 2904--2944 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
2894 GCAAAACCCT
2904 TTTATCTTCAAAACCCAGAAA
1 TTTATCTTCAAAACCCAGAAA
2925 TTTATCTTCAAAACCCAGAA
1 TTTATCTTCAAAACCCAGAA
2945 TTTGTTGTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.41, C:0.24, G:0.05, T:0.29
Consensus pattern (21 bp):
TTTATCTTCAAAACCCAGAAA
Found at i:14639 original size:31 final size:32
Alignment explanation
Indices: 14592--14674 Score: 87
Period size: 31 Copynumber: 2.6 Consensus size: 32
14582 AACTATTGTG
* *
14592 TCAAAGACGTTTTGTCCCCTAAACTTGC-AAAT
1 TCAAA-ACATTTTGTCCCCTAAACTTCCTAAAT
** * *
14624 TCATGACATTTTGTCCCTTGAACTTCCTAAAT
1 TCAAAACATTTTGTCCCCTAAACTTCCTAAAT
14656 TCAAAACATTTTGCTCCCC
1 TCAAAACATTTTG-TCCCC
14675 GATGGAGTGG
Statistics
Matches: 40, Mismatches: 9, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
31 18 0.45
32 18 0.45
33 4 0.10
ACGTcount: A:0.28, C:0.28, G:0.10, T:0.35
Consensus pattern (32 bp):
TCAAAACATTTTGTCCCCTAAACTTCCTAAAT
Found at i:20285 original size:36 final size:39
Alignment explanation
Indices: 20233--20318 Score: 124
Period size: 39 Copynumber: 2.3 Consensus size: 39
20223 AAATAATCTC
*
20233 ATGGAGCATGT-TAAAA-A-TGGAGAGTTTCTAAGTGAA
1 ATGGAGCATGTAAAAAATATTGGAGAGTTTCTAAGTGAA
* *
20269 ATGGAGCATGTAAAAAATATTGGAGAGTTTCTGAGTTAA
1 ATGGAGCATGTAAAAAATATTGGAGAGTTTCTAAGTGAA
20308 ATGGAGCATGT
1 ATGGAGCATGT
20319 TTAATTTGTA
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
36 11 0.25
37 4 0.09
38 1 0.02
39 28 0.64
ACGTcount: A:0.37, C:0.06, G:0.28, T:0.29
Consensus pattern (39 bp):
ATGGAGCATGTAAAAAATATTGGAGAGTTTCTAAGTGAA
Found at i:22832 original size:21 final size:21
Alignment explanation
Indices: 22806--22856 Score: 86
Period size: 21 Copynumber: 2.4 Consensus size: 21
22796 GAATCAATCT
22806 ACATGATTTGCGGACACGGT-A
1 ACATGATTTGCGGACAC-GTCA
22827 ACATGATTTGCGGACACGTCA
1 ACATGATTTGCGGACACGTCA
22848 ACATGATTT
1 ACATGATTT
22857 TCGGCTTCAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
20 2 0.07
21 27 0.93
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (21 bp):
ACATGATTTGCGGACACGTCA
Found at i:25347 original size:21 final size:21
Alignment explanation
Indices: 25321--25371 Score: 77
Period size: 21 Copynumber: 2.4 Consensus size: 21
25311 GAATCAATCT
25321 ACATGATTTGCGGACACGGT-A
1 ACATGATTTGCGGACA-GGTCA
*
25342 ACATGATTTGCGGACATGTCA
1 ACATGATTTGCGGACAGGTCA
25363 ACATGATTT
1 ACATGATTT
25372 TCGGCTTCAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
20 2 0.07
21 26 0.93
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (21 bp):
ACATGATTTGCGGACAGGTCA
Found at i:35568 original size:28 final size:28
Alignment explanation
Indices: 35523--35576 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
35513 GTAGTTTGAG
* *
35523 GGGGCAAAATATCTTGATTTGAAATTTA
1 GGGGCAAAATATCCTGATTTAAAATTTA
*
35551 GGGGCAAAATGTCCTGATTTAAAATT
1 GGGGCAAAATATCCTGATTTAAAATT
35577 CATGAGGCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.35, C:0.09, G:0.22, T:0.33
Consensus pattern (28 bp):
GGGGCAAAATATCCTGATTTAAAATTTA
Found at i:36664 original size:24 final size:26
Alignment explanation
Indices: 36637--36698 Score: 65
Period size: 28 Copynumber: 2.4 Consensus size: 26
36627 ACGATGATGA
*
36637 TGATCATATA-TA-AATAATGAAATG
1 TGATCATATATTATAATAAAGAAATG
* *
36661 TGATCACCAATATTATATTAAAGAAATG
1 TGATCA--TATATTATAATAAAGAAATG
36689 TGATCATATA
1 TGATCATATA
36699 AATAAAGACT
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
24 6 0.20
26 6 0.20
27 2 0.07
28 16 0.53
ACGTcount: A:0.47, C:0.08, G:0.11, T:0.34
Consensus pattern (26 bp):
TGATCATATATTATAATAAAGAAATG
Found at i:38545 original size:60 final size:60
Alignment explanation
Indices: 38470--38622 Score: 191
Period size: 59 Copynumber: 2.6 Consensus size: 60
38460 AAATATGGGT
* *
38470 CTAACGTTTGTCAAAATACTCAAATAAGGGTCTGATCTTTTAATTTGGCCAAATAAAAGC
1 CTAACGTTTGCCAAAATACTCAAATAAGGGTCTGATCTTTGAATTTGGCCAAATAAAAGC
* ** ** * ** *
38530 CTAATGTTTGCCAAAATGTTCAAATAA-GACCTCATCTTTGAATTTGGCCAAATAAGGGT
1 CTAACGTTTGCCAAAATACTCAAATAAGGGTCTGATCTTTGAATTTGGCCAAATAAAAGC
*
38589 CTAACGTTTGCCAAAATTCTCAAATAAGGGTCTG
1 CTAACGTTTGCCAAAATACTCAAATAAGGGTCTG
38623 TCTCACGCAT
Statistics
Matches: 75, Mismatches: 17, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
59 49 0.65
60 26 0.35
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (60 bp):
CTAACGTTTGCCAAAATACTCAAATAAGGGTCTGATCTTTGAATTTGGCCAAATAAAAGC
Found at i:38691 original size:31 final size:31
Alignment explanation
Indices: 38653--38847 Score: 145
Period size: 31 Copynumber: 6.4 Consensus size: 31
38643 GAAACCAGGT
*
38653 CCTTATTTGAACATTTTCGATAACGTTAGGC
1 CCTTATTTGAGCATTTTCGATAACGTTAGGC
*
38684 CCTTATTTGAGCATTTTCGATAACGTTGGGC
1 CCTTATTTGAGCATTTTCGATAACGTTAGGC
* * ** * * *
38715 TCTTATTTGACCAAATT--A-AAAGATCAGGT
1 CCTTATTTGAGCATTTTCGATAACG-TTAGGC
*
38744 CCTTATTTGAGCATTTTCGATAATGTTAGGC
1 CCTTATTTGAGCATTTTCGATAACGTTAGGC
** * *
38775 CCTTATTTG-GCCAAATTC-A-AA-GATGAGAC
1 CCTTATTTGAG-CATTTTCGATAACG-TTAGGC
* * *
38804 CCTTATTTGAGCATTTTAGCA-AACATTAGAC
1 CCTTATTTGAGCATTTTCG-ATAACGTTAGGC
38835 CCTTATTTGAGCA
1 CCTTATTTGAGCA
38848 ATTAACCTTC
Statistics
Matches: 128, Mismatches: 26, Indels: 20
0.74 0.15 0.11
Matches are distributed among these distances:
28 4 0.03
29 36 0.28
30 3 0.02
31 82 0.64
32 3 0.02
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.36
Consensus pattern (31 bp):
CCTTATTTGAGCATTTTCGATAACGTTAGGC
Found at i:38753 original size:60 final size:60
Alignment explanation
Indices: 38683--38852 Score: 209
Period size: 60 Copynumber: 2.9 Consensus size: 60
38673 TAACGTTAGG
* * *
38683 CCCTTATTTGAGCATTTTCGATAACGTTGGGCTCTTATTTGACCAAATTAAAAGATCAGG
1 CCCTTATTTGAGCATTTTCGATAACGTTAGGCCCTTATTTGACCAAATTAAAAGATCAGA
* * * * *
38743 TCCTTATTTGAGCATTTTCGATAATGTTAGGCCCTTATTTGGCCAAATTCAAAGATGAGA
1 CCCTTATTTGAGCATTTTCGATAACGTTAGGCCCTTATTTGACCAAATTAAAAGATCAGA
* * * *
38803 CCCTTATTTGAGCATTTTAGCA-AACATTAGACCCTTATTTGAGC-AATTAA
1 CCCTTATTTGAGCATTTTCG-ATAACGTTAGGCCCTTATTTGACCAAATTAA
38853 CCTTCTTTTT
Statistics
Matches: 93, Mismatches: 16, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
59 5 0.05
60 87 0.94
61 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.36
Consensus pattern (60 bp):
CCCTTATTTGAGCATTTTCGATAACGTTAGGCCCTTATTTGACCAAATTAAAAGATCAGA
Found at i:39306 original size:23 final size:22
Alignment explanation
Indices: 39261--39306 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
39251 AAAATAGGGT
*
39261 AGTCAACGGAAAATAACATAAA
1 AGTCAACGGAAAATAACACAAA
*
39283 AGTCCACGGAAAATAAACACAAA
1 AGTCAACGGAAAAT-AACACAAA
39306 A
1 A
39307 CACGGGAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 13 0.62
23 8 0.38
ACGTcount: A:0.59, C:0.17, G:0.13, T:0.11
Consensus pattern (22 bp):
AGTCAACGGAAAATAACACAAA
Found at i:40712 original size:2 final size:2
Alignment explanation
Indices: 40705--40757 Score: 65
Period size: 2 Copynumber: 27.0 Consensus size: 2
40695 ATGTAGGATA
* *
40705 AT AT AT AT AT AT AT AT AT AT AT GT AGG AT A- AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT
40747 AT AT AT A- AT AT
1 AT AT AT AT AT AT
40758 GAACTTTTAA
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
1 2 0.05
2 41 0.93
3 1 0.02
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.45
Consensus pattern (2 bp):
AT
Found at i:40731 original size:30 final size:31
Alignment explanation
Indices: 40695--40758 Score: 121
Period size: 30 Copynumber: 2.1 Consensus size: 31
40685 TAGGCCTTTG
40695 ATGTAGGATAATATATATATATATATAT-AT
1 ATGTAGGATAATATATATATATATATATAAT
40725 ATGTAGGATAATATATATATATATATATAAT
1 ATGTAGGATAATATATATATATATATATAAT
40756 ATG
1 ATG
40759 AACTTTTAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 28 0.85
31 5 0.15
ACGTcount: A:0.47, C:0.00, G:0.11, T:0.42
Consensus pattern (31 bp):
ATGTAGGATAATATATATATATATATATAAT
Found at i:41014 original size:22 final size:22
Alignment explanation
Indices: 40988--41041 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
40978 GTTTGGTAAT
*
40988 ATTTTATATTTTATGTAGGATG
1 ATTTTATATTTTATATAGGATG
* **
41010 ATTTTATTTTTTATATAGTTTG
1 ATTTTATATTTTATATAGGATG
41032 ATTTTTATAT
1 A-TTTTATAT
41042 ATAATCATTT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
22 19 0.73
23 7 0.27
ACGTcount: A:0.26, C:0.00, G:0.11, T:0.63
Consensus pattern (22 bp):
ATTTTATATTTTATATAGGATG
Found at i:47170 original size:14 final size:14
Alignment explanation
Indices: 47151--47178 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
47141 ATTTTTACTC
47151 TCCAATGTACTCAA
1 TCCAATGTACTCAA
47165 TCCAATGTACTCAA
1 TCCAATGTACTCAA
47179 CACCAAATTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.29, G:0.07, T:0.29
Consensus pattern (14 bp):
TCCAATGTACTCAA
Found at i:47247 original size:12 final size:12
Alignment explanation
Indices: 47224--47256 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
47214 AAATTAAGTC
47224 TTAAAAATAATTA
1 TTAAAAA-AATTA
47237 TTAAAAAAATTA
1 TTAAAAAAATTA
47249 -TAAAAAAA
1 TTAAAAAAA
47257 CATATTCAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 8 0.40
12 5 0.25
13 7 0.35
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (12 bp):
TTAAAAAAATTA
Found at i:51990 original size:20 final size:20
Alignment explanation
Indices: 51965--52002 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
51955 CAAAAGTGAA
51965 TTACTAAATACCGCCCCCTT
1 TTACTAAATACCGCCCCCTT
**
51985 TTACTAGCTACCGCCCCC
1 TTACTAAATACCGCCCCC
52003 CCTTTGGACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.21, C:0.45, G:0.08, T:0.26
Consensus pattern (20 bp):
TTACTAAATACCGCCCCCTT
Found at i:58628 original size:6 final size:6
Alignment explanation
Indices: 58614--58671 Score: 55
Period size: 6 Copynumber: 9.5 Consensus size: 6
58604 GCTAAGATAG
* * * *
58614 TTTCAT TTTCCT TTTCCT TTTCCG TTTCCG TTTCCG TTT-CT GTTTCCT
1 TTTCCT TTTCCT TTTCCT TTTCCT TTTCCT TTTCCT TTTCCT -TTTCCT
58662 TTTCCCT TTT
1 TTT-CCT TTT
58672 TTTGGGGCTT
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
5 1 0.02
6 37 0.80
7 8 0.17
ACGTcount: A:0.02, C:0.29, G:0.07, T:0.62
Consensus pattern (6 bp):
TTTCCT
Found at i:58641 original size:18 final size:18
Alignment explanation
Indices: 58620--58671 Score: 68
Period size: 18 Copynumber: 2.8 Consensus size: 18
58610 ATAGTTTCAT
58620 TTTCCTTTTCCTTTTCCG
1 TTTCCTTTTCCTTTTCCG
* * *
58638 TTTCCGTTTCCGTTTCTG
1 TTTCCTTTTCCTTTTCCG
58656 TTTCCTTTTCCCTTTT
1 TTTCCTTTT-CCTTTT
58672 TTTGGGGCTT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
18 23 0.82
19 5 0.18
ACGTcount: A:0.00, C:0.31, G:0.08, T:0.62
Consensus pattern (18 bp):
TTTCCTTTTCCTTTTCCG
Found at i:60006 original size:45 final size:45
Alignment explanation
Indices: 59924--60013 Score: 126
Period size: 45 Copynumber: 2.0 Consensus size: 45
59914 GGAAACTTGG
* **
59924 AGCACTTGGTAATCATGGAGCCAAAGCTCTCTTTGATCTCCTTCA
1 AGCACTTGGCAATCATGGAGCCAAAGCTCTCCGTGATCTCCTTCA
* * *
59969 AGCATTTGGCAATCATGGAGCCTAAGCTTTCCGTGATCTCCTTCA
1 AGCACTTGGCAATCATGGAGCCAAAGCTCTCCGTGATCTCCTTCA
60014 CGTTTTCACT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (45 bp):
AGCACTTGGCAATCATGGAGCCAAAGCTCTCCGTGATCTCCTTCA
Found at i:60582 original size:33 final size:34
Alignment explanation
Indices: 60479--60705 Score: 399
Period size: 33 Copynumber: 6.8 Consensus size: 34
60469 TTAAGGGCCA
60479 ATGTGAGAATTAAGGCAAGTTCAATGTTTTTTGG
1 ATGTGAGAATTAAGGCAAGTTCAATGTTTTTTGG
60513 ATGTGAGAATTAAGGCAAGTTCAATGTTTTTTGG
1 ATGTGAGAATTAAGGCAAGTTCAATGTTTTTTGG
60547 ATGTGAGAATTAAGGCAAGTTCAATG-TTTTTGG
1 ATGTGAGAATTAAGGCAAGTTCAATGTTTTTTGG
60580 ATGTGAGAATTAAGGCAAGTTCAATG-TTTTTGG
1 ATGTGAGAATTAAGGCAAGTTCAATGTTTTTTGG
*
60613 ATTTGAGAATTAAGGCAAGTTCAATGTTTTTTGG
1 ATGTGAGAATTAAGGCAAGTTCAATGTTTTTTGG
*
60647 ATTTGAGAA-TAAGGCAAGTTCAATGTTTTTTGG
1 ATGTGAGAATTAAGGCAAGTTCAATGTTTTTTGG
*
60680 ATTTGAGAA-TAAGGCAAGTTCAATGT
1 ATGTGAGAATTAAGGCAAGTTCAATGT
60706 CGATTGGGAA
Statistics
Matches: 191, Mismatches: 1, Indels: 3
0.98 0.01 0.02
Matches are distributed among these distances:
33 115 0.60
34 76 0.40
ACGTcount: A:0.31, C:0.06, G:0.26, T:0.37
Consensus pattern (34 bp):
ATGTGAGAATTAAGGCAAGTTCAATGTTTTTTGG
Found at i:62674 original size:44 final size:44
Alignment explanation
Indices: 62610--62697 Score: 158
Period size: 44 Copynumber: 2.0 Consensus size: 44
62600 AAATTGAGGG
* *
62610 AAAAATTTTCTATTTTAAAATTTGCAAAATTTAAGTCGAAATCA
1 AAAAATTTTCTATTTCAAAATTTGCAAAATTTAAGCCGAAATCA
62654 AAAAATTTTCTATTTCAAAATTTGCAAAATTTAAGCCGAAATCA
1 AAAAATTTTCTATTTCAAAATTTGCAAAATTTAAGCCGAAATCA
62698 TGTGCTAACT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.45, C:0.11, G:0.07, T:0.36
Consensus pattern (44 bp):
AAAAATTTTCTATTTCAAAATTTGCAAAATTTAAGCCGAAATCA
Found at i:64932 original size:332 final size:330
Alignment explanation
Indices: 63481--67882 Score: 5769
Period size: 333 Copynumber: 13.3 Consensus size: 330
63471 TAGTATTTAT
* *
63481 GGATTTGTTTTTACGAACATCTGAATTGTGTTTCGATTTAATTAGAAATTAATTC-GAAAAAAAA
1 GGATTTGTTTTTACGAACATCTGAATTATGTTTCGATTTAATTAGAAATTAATTCGGAAAAAATA
* * * * *
63545 GGAAAAACGATATTAGAAGCGTGGAAAGCCCTTTAATATTTTTTTGCGATGAATTATATACTTTT
66 GGAAAAACGATATTAGAAGCATGAAAAGCCCTTCAATCTTTTTTTGGGATGAATTATATACTTTT
* * * * *
63610 TATGAGTATTATGACAAAAAATTGAGGTAATAATTTTCGGTTCAATTTTTGCAAAATTTAAGCAG
131 TATGAGTATTGTGACAAAAAATTGAGGGAAAAACTTTCGGTTCAATTTTTGCAAAATTTAAGCGG
* * *
63675 TAATCGTGTACTATCCATCACGGGTTTTGGCTAAAAACGCGTTCCGGGTCCCCGGTTCAGTTTTG
196 TAATCGTGTACTAACCATCAC-GGTTTTTGCTAAAAACGCGTTCCGGG--CCCGGCTCAGTTTTG
* *
63740 CATGA-TTTTTGCGTCAAGACTTCTTGCAGTATCTAT-TCTCATCTAACCAAATCTTAGGCACAA
258 CATGATTTTTTGCGTCAAGACTTCTTGCAATATCTATAT-TCATCTAACCAAATCTCAGGCACAA
63803 TGGATTTGA
322 TGGATTTGA
* * *
63812 GGATTTGTTTTTACAAACATCTGAATTATGTTTCAATTTAATTAAAAGATTAATTC-GAAAAAAT
1 GGATTTGTTTTTACGAACATCTGAATTATGTTTCGATTTAATTAGAA-ATTAATTCGGAAAAAAT
* * *
63876 AGGAAAAACGATATTAGAAGCATGAAAAGCCCTTCGAT-ATGTTTTGGGATGAATTATATACTTT
65 AGGAAAAACGATATTAGAAGCATGAAAAGCCCTTCAATCTTTTTTTGGGATGAATTATATACTTT
* * *
63940 TTATGAGTATTGTGACAAAAAATTGAGGTAAAAAATTTCGGTTTAATTTTTGCAAAATTTAAGCG
130 TTATGAGTATTGTGACAAAAAATTGAGGGAAAAACTTTCGGTTCAATTTTTGCAAAATTTAAGCG
* * * *
64005 GTAATCGTGTACTAACAATCACGGTTTTTGGCTAAAAACGTGTTCCGGGCCCCGGTTCAGTTTTC
195 GTAATCGTGTACTAACCATCACGGTTTTT-GCTAAAAACGCGTTCCGGG-CCCGGCTCAGTTTTG
* * * * ** * *
64070 CATGATTTTTTGCGCCAAGACCTCTTGTAATATCTATATTCATTTAACTGAATCTCAGCCATC-T
258 CATGATTTTTTGCGTCAAGACTTCTTGCAATATCTATATTCATCTAACCAAATCTCAGGCA-CAA
*
64134 TTGATTTGA
322 TGGATTTGA
* * * *
64143 GGATTTGTTTTAACGAGCATCTGAATTATATTCCGATTTAATTAGAAATTAATTCGGAAAAAAAA
1 GGATTTGTTTTTACGAACATCTGAATTATGTTTCGATTTAATTAGAAATTAATTCGG--AAAAAA
*
64208 TAGGAAAAATGATATTAGAAGCATGAAAAGCCCTTCAATCTTTTTTTGGGATGAATTATATACTT
64 TAGGAAAAACGATATTAGAAGCATGAAAAGCCCTTCAATCTTTTTTTGGGATGAATTATATACTT
* * * **
64273 TTTATGAGTATTGTGACAAAAAATTGAGGTAATAATTTTCGGTTCAATTTTTGCAAAATTTAAAT
129 TTTATGAGTATTGTGACAAAAAATTGAGGGAAAAACTTTCGGTTCAATTTTTGCAAAATTTAAGC
*
64338 GGTAATCGTG-----A-CATCACGAGTTTTGGCTAAAAACGCGTTCCGGGTCCTCGGCTCAGTTT
194 GGTAATCGTGTACTAACCATCACG-GTTTTTGCTAAAAACGCGTTCCGGG-CC-CGGCTCAGTTT
* * * * * *
64397 TACATGATTTTTTGCGTCAAGACTTCTTCCAGTATATAT-TCTCATCTAACCTAATCTTAGGCAC
256 TGCATGATTTTTTGCGTCAAGACTTCTTGCAATATCTATAT-TCATCTAACCAAATCTCAGGCAC
64461 AATGGATTTGA
320 AATGGATTTGA
* * * *
64472 GGATTTGTTTTTACAAACATCTGAATTATGTTTCAATATAATTAGAAATTAATTCGAAAAAAATA
1 GGATTTGTTTTTACGAACATCTGAATTATGTTTCGATTTAATTAGAAATTAATTCGGAAAAAATA
* *
64537 GGAAAAACGATATTAGAAGCATGAAAAGCCCATCAATCTTTTTTGGGGATGAATTATATACTTTT
66 GGAAAAACGATATTAGAAGCATGAAAAGCCCTTCAATCTTTTTTTGGGATGAATTATATACTTTT
*
64602 TATGAGTATTGTGACCAAAAATTGAGGGAAACAA-TTTCGGTTCAATTTTTGCAAAATTTAAGCG
131 TATGAGTATTGTGACAAAAAATTGAGGGAAA-AACTTTCGGTTCAATTTTTGCAAAATTTAAGCG
* * * * * * *
64666 GAAATCGTGTACTAACCATAACAGTTTTTACTAATAACGCCTTTCGAGGCCCGGACTCAGTTTTG
195 GTAATCGTGTACTAACCATCACGGTTTTTGCTAAAAACGCGTTCCG-GGCCCGG-CTCAGTTTTG
* *
64731 CATGA-TTTTTGCGTCAAGACTTCTTGCACTATCTATATTCATCTAACCGAATCTCAGGCACAAT
258 CATGATTTTTTGCGTCAAGACTTCTTGCAATATCTATATTCATCTAACCAAATCTCAGGCACAAT
* *
64795 GGATTGGT
323 GGATTTGA
* * *
64803 GGATTTATTTTTACGAACATCTGAATTATGTTTTGAATTAATTAGAAATTAATTCGGACAAAAAT
1 GGATTTGTTTTTACGAACATCTGAATTATGTTTCGATTTAATTAGAAATTAATTCGGA-AAAAAT
* * *
64868 ACGAAAAGCGATATTAGAAGCGTGAAAAGCCCTTCAATCTTTTTTTGGGATGAATTATATACTTT
65 AGGAAAAACGATATTAGAAGCATGAAAAGCCCTTCAATCTTTTTTTGGGATGAATTATATACTTT
* ** *
64933 TTATCAGTATTGTGACAAAAAATTGAGATAAAAATTTTCGGTTCAATTTTTGCAAAATTTAAGCG
130 TTATGAGTATTGTGACAAAAAATTGAGGGAAAAACTTTCGGTTCAATTTTTGCAAAATTTAAGCG
* * * *
64998 GTAATCGTATACTAACCATCACGGTTTTTGGCTAAAAACGCGATCCCGGTCCCCGGCTTAGTTTT
195 GTAATCGTGTACTAACCATCACGGTTTTT-GCTAAAAACGCG-TTCCGG-GCCCGGCTCAGTTTT
*
65063 GCATGATTTTTTGCGTCAAGACTTCTTG-AAGTATCTAT-TCTCATATAACCAAATCTCAGGCAC
257 GCATGATTTTTTGCGTCAAGACTTCTTGCAA-TATCTATAT-TCATCTAACCAAATCTCAGGCAC
*
65126 ACTGGATTTGA
320 AATGGATTTGA
* ** * *
65137 GAATTTGTTTTTATTAACATCTGAATTATGTTTCGATTTACTTAGAAATTAATTCGAATAAAAAA
1 GGATTTGTTTTTACGAACATCTGAATTATGTTTCGATTTAATTAGAAATTAATTCG--GAAAAAA
*
65202 TAGGAAAAACGATATTAGAAGCATGAAAAGCCCTTCAAT-ATTTTTTGGGATGAATTATATACTT
64 TAGGAAAAACGATATTAGAAGCATGAAAAGCCCTTCAATCTTTTTTTGGGATGAATTATATACTT
*
65266 TTTATGAGTATTGTGACCAAAAATTGAGGGAAAAACTTTCGGTTCAATTTTTGCAAAATTTAAGC
129 TTTATGAGTATTGTGACAAAAAATTGAGGGAAAAACTTTCGGTTCAATTTTTGCAAAATTTAAGC
* * *
65331 GGAAATCGTG---T--CCATCACGGTTTTTTGGCTAAAAACGCCTTTCGAGGCCCGGACTCAGTT
194 GGTAATCGTGTACTAACCATCACGG-TTTTT-GCTAAAAACGCGTTCCG-GGCCCGG-CTCAGTT
*
65391 TTGCATGATTTTTTGCGTCAAGACTTCTTGCAATATCTATATTCATCTAAGCAAATCTCAGGCAC
255 TTGCATGATTTTTTGCGTCAAGACTTCTTGCAATATCTATATTCATCTAACCAAATCTCAGGCAC
*
65456 AATGGATTTGT
320 AATGGATTTGA
* * *
65467 GGATTTGTTTTTACGAACATCTGAATTATATTTTGATTTAATTAGAAATTAATTC-GACTAAAAT
1 GGATTTGTTTTTACGAACATCTGAATTATGTTTCGATTTAATTAGAAATTAATTCGGA-AAAAAT
* *
65531 AGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAATC-ATTTTTGGGATGAATTATATACTTT
65 AGGAAAAACGATATTAGAAGCATGAAAAGCCCTTCAATCTTTTTTTGGGATGAATTATATACTTT
*
65595 TTATGAGTATTGTGACCAAAAATTGAGGGAAAAACTTTCGGTTCAATTTTTGCAAAATTTAAGCG
130 TTATGAGTATTGTGACAAAAAATTGAGGGAAAAACTTTCGGTTCAATTTTTGCAAAATTTAAGCG
* * * ** * * **
65660 GAAATCGTATACTAACCATCACGGTTCTTGGCTAAAAATTCCTTTCGAGGCCCAGATTCAGTTTT
195 GTAATCGTGTACTAACCATCACGGTT-TTTGCTAAAAACGCGTTCCG-GGCCC-GGCTCAGTTTT
* * *
65725 GCATGATTTTTTGTGTCAAGACTTCTTGTAATATCTATATTCATCTAACCAAATCTCAAGCACAA
257 GCATGATTTTTTGCGTCAAGACTTCTTGCAATATCTATATTCATCTAACCAAATCTCAGGCACAA
*
65790 TGGATTTGT
322 TGGATTTGA
*
65799 GGTTTTGTTTTTACGAACATCTGAATTATGTTTCGATTTAATT-GAAAATTAATTCGGAAAAAAT
1 GGATTTGTTTTTACGAACATCTGAATTATGTTTCGATTTAATTAG-AAATTAATTCGGAAAAAAT
* * * *
65863 AGGAAAAACGATATTAGAAGCGTGAATATCCCTTCAATGTTTTTTTGGGATGAATTATATACTTT
65 AGGAAAAACGATATTAGAAGCATGAAAAGCCCTTCAATCTTTTTTTGGGATGAATTATATACTTT
* *
65928 TTATGAGTATTGTGACAAAAAATTGA-GGAAATAATTTTCGGTTCAATTTTTGCAAAATTTAAGA
130 TTATGAGTATTGTGACAAAAAATTGAGGGAAA-AACTTTCGGTTCAATTTTTGCAAAATTTAAGC
* * *
65992 GGTAATCGTATACTAACCACCACGGTTTTTGGCTAAAAACGCGTTCCGGGTACCCGACTCAGTTT
194 GGTAATCGTGTACTAACCATCACGGTTTTT-GCTAAAAACGCGTTCCGGG--CCCGGCTCAGTTT
* * * * * * *
66057 TACATGATTTTTCGCATGAAGAATTCTTGCAGTAACTAT-TCTCATCTAACCAAATCTCAGGCAC
256 TGCATGATTTTTTGCGTCAAGACTTCTTGCAATATCTATAT-TCATCTAACCAAATCTCAGGCAC
66121 AATGGATTTGA
320 AATGGATTTGA
66132 GGATTTGTTTTTA-GAAACATCTGAATTATGTTTCGATTTAATTAGAAATTAATTC-GAAAAAAT
1 GGATTTGTTTTTACG-AACATCTGAATTATGTTTCGATTTAATTAGAAATTAATTCGGAAAAAAT
* * *
66195 AGGAAAAATGATATTAGAAGCATGAAAAGCCCTTCAAT-ATTTTTTGGGATGAATTTTATACTTT
65 AGGAAAAACGATATTAGAAGCATGAAAAGCCCTTCAATCTTTTTTTGGGATGAATTATATACTTT
* *
66259 TTATGAGTATTGTGACCAAAAATTGAGAGAAAAACTTTCGGTTCAATTTTTGCAAAATTTAAGCG
130 TTATGAGTATTGTGACAAAAAATTGAGGGAAAAACTTTCGGTTCAATTTTTGCAAAATTTAAGCG
* *
66324 G-AATCGTGTACTAACTATCACGGTTTTTGGCTAAAAACGCGTTCCGTGGCCCCGACTCAGTTTT
195 GTAATCGTGTACTAACCATCACGGTTTTT-GCTAAAAACGCGTTCCG-GG-CCCGGCTCAGTTTT
* * * *
66388 GCAAGATTTTTTTCGTCAAGACTTCTTCCAATATCTATATTCATCTAACCAAATATCAGGCACAA
257 GCATGATTTTTTGCGTCAAGACTTCTTGCAATATCTATATTCATCTAACCAAATCTCAGGCACAA
66453 TGGATTTGA
322 TGGATTTGA
** *
66462 GGATTTGTTTTTACGAACATCTGAATTAAATTTCGATTTAATTGGAAATTAATTCGGAAAAAAAA
1 GGATTTGTTTTTACGAACATCTGAATTATGTTTCGATTTAATTAGAAATTAATTCGG--AAAAAA
* * *
66527 TAGGAAAAACGATATTACAAGCGTGAAAAGCCCTTCAATCTTTGTTTGGGATGAATTATATACTT
64 TAGGAAAAACGATATTAGAAGCATGAAAAGCCCTTCAATCTTTTTTTGGGATGAATTATATACTT
** * **
66592 TTTATGAGTATTGTGACAAAAAATTGAGATAATAGTTTTCGG-TCAATTTTTGCAAAATTTAAGC
129 TTTATGAGTATTGTGACAAAAAATTGAGGGAAAAACTTTCGGTTCAATTTTTGCAAAATTTAAGC
* * * * * *
66656 AGTAATCGTG---------T-ACGGGTTTTGGTAAAAACACTTTCCGGGTCCCCGACTCAGTTTT
194 GGTAATCGTGTACTAACCATCACGGTTTTTGCTAAAAACGCGTTCCGGG--CCCGGCTCAGTTTT
** *
66711 GCATGATTTTTTGCGTCAAGTTTTCTTGCAGTATCTAT-TCTCATCTAACCAAATCTCAGGCACA
257 GCATGATTTTTTGCGTCAAGACTTCTTGCAATATCTATAT-TCATCTAACCAAATCTCAGGCACA
66775 ATGGATTTGA
321 ATGGATTTGA
*
66785 GGATTTGTTTTTACAAACATCTGAATTATGTTTCGATTTAATTAGAAATTAATTC-GAAAAAATA
1 GGATTTGTTTTTACGAACATCTGAATTATGTTTCGATTTAATTAGAAATTAATTCGGAAAAAATA
* * * *
66849 GGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAAT-ATTTTTGGGGATGAATTTTATACTTTT
66 GGAAAAACGATATTAGAAGCATGAAAAGCCCTTCAATCTTTTTTTGGGATGAATTATATACTTTT
* * *
66913 TATGAGTATTGTGACCAAAAATTGAGAGAAAAACTTTCGGTTCAATTTTTGTAAAATTTAAGCGG
131 TATGAGTATTGTGACAAAAAATTGAGGGAAAAACTTTCGGTTCAATTTTTGCAAAATTTAAGCGG
*
66978 --A---TGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCGTGGCGCCGGCTCGGTTTTG
196 TAATCGTGTACTAACCATCACGGTTTTT-GCTAAAAACGCGTTCCG-GGC-CCGGCTCAGTTTTG
* * *
67038 CAAG-TTTTTTGCGTCAAGACTTCTTCCAATATCTATATTCATCTAACCAAATCTCAGGCACAGT
258 CATGATTTTTTGCGTCAAGACTTCTTGCAATATCTATATTCATCTAACCAAATCTCAGGCACAAT
67102 GGATTTGA
323 GGATTTGA
*
67110 GGATTTG-TTTTACGAACATCTGAATTATATTTCGATTTAATTAGAAATTAATTCGGAAAAAAAT
1 GGATTTGTTTTTACGAACATCTGAATTATGTTTCGATTTAATTAGAAATTAATTCGG-AAAAAAT
* * * *
67174 AGGAAAAACGATATTAGAAGCGTGAAAATCCCTTCAATATTTTTTTTGGATGAATTATATAC-TT
65 AGGAAAAACGATATTAGAAGCATGAAAAGCCCTTCAATCTTTTTTTGGGATGAATTATATACTTT
* * * *
67238 TTATGAGTATTGTGCCAAAAAAAATTGAGGTAAAAATTTTCGGTTTAATTTTTGCAAAATTTAAG
130 TTATGAGTATTGTG--ACAAAAAATTGAGGGAAAAACTTTCGGTTCAATTTTTGCAAAATTTAAG
* * * *
67303 CGGTAATCGTGTACTAACAATCACGGTTTCTGGCTAAAAACGTGTTCCGGTCCCCGGCTCAGTTT
193 CGGTAATCGTGTACTAACCATCACGGTTT-TTGCTAAAAACGCGTTCCGG-GCCCGGCTCAGTTT
* * * * * *
67368 TCCATGATTTTTTGCGCCAAGACCTCTTGTAATATCTATATTCATCTAACTAAATCTCAGCCATC
256 TGCATGATTTTTTGCGTCAAGACTTCTTGCAATATCTATATTCATCTAACCAAATCTCAGGCA-C
* *
67433 -TTTGATTTGA
320 AATGGATTTGA
* * *
67443 GGATTTGTTTTAACGAGCATCTGAATTATGTTCCGATTTAATTAGAAATTAATTCGGAAAAAACT
1 GGATTTGTTTTTACGAACATCTGAATTATGTTTCGATTTAATTAGAAATTAATTCGGAAAAAA-T
*
67508 AGGAAAAACGATATTAGAAGCATGAAAAGCCCTACAATCTTTTTTTGGGATGAATTATATACTTT
65 AGGAAAAACGATATTAGAAGCATGAAAAGCCCTTCAATCTTTTTTTGGGATGAATTATATACTTT
* * * * *
67573 TTGTGAGTATTGTGACAAAAAATTGAGGTAATAATTTTCGGTTCAATTTTTGCAAAATTTAAACG
130 TTATGAGTATTGTGACAAAAAATTGAGGGAAAAACTTTCGGTTCAATTTTTGCAAAATTTAAGCG
* * *
67638 GTAATCGTG-----A-CATCACGGGTTTTGGCTAAAAAAGCGTTCCGTGTCCCCGGCTCAGTTTT
195 GTAATCGTGTACTAACCATCAC-GGTTTTTGCTAAAAACGCGTTCCG-G-GCCCGGCTCAGTTTT
* * *
67697 GCATGATTTTTTGCGTCAAGACTTCTTGCAGTATATAT-TCTCATCTAACCTAATCTCAGGCACA
257 GCATGATTTTTTGCGTCAAGACTTCTTGCAATATCTATAT-TCATCTAACCAAATCTCAGGCACA
67761 ATGGATTTGA
321 ATGGATTTGA
* *** * *
67771 GGATTTGTTTTTACAAACATCTGAATTATGTTTCGATTTAATTTCTAATTAAATCGAATAAAAAA
1 GGATTTGTTTTTACGAACATCTGAATTATGTTTCGATTTAATTAGAAATTAATTCG--GAAAAAA
*
67836 TTAGGAAAAACGATATTAGAAGCATGAAAAGCCCTTCAATCTCTTTT
64 -TAGGAAAAACGATATTAGAAGCATGAAAAGCCCTTCAATCTTTTTT
Statistics
Matches: 3605, Mismatches: 360, Indels: 213
0.86 0.09 0.05
Matches are distributed among these distances:
315 2 0.00
318 1 0.00
319 58 0.02
320 66 0.02
322 4 0.00
323 145 0.04
324 54 0.01
325 79 0.02
326 90 0.02
327 180 0.05
328 344 0.10
329 139 0.04
330 392 0.11
331 463 0.13
332 501 0.14
333 556 0.15
334 474 0.13
335 56 0.02
336 1 0.00
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.36
Consensus pattern (330 bp):
GGATTTGTTTTTACGAACATCTGAATTATGTTTCGATTTAATTAGAAATTAATTCGGAAAAAATA
GGAAAAACGATATTAGAAGCATGAAAAGCCCTTCAATCTTTTTTTGGGATGAATTATATACTTTT
TATGAGTATTGTGACAAAAAATTGAGGGAAAAACTTTCGGTTCAATTTTTGCAAAATTTAAGCGG
TAATCGTGTACTAACCATCACGGTTTTTGCTAAAAACGCGTTCCGGGCCCGGCTCAGTTTTGCAT
GATTTTTTGCGTCAAGACTTCTTGCAATATCTATATTCATCTAACCAAATCTCAGGCACAATGGA
TTTGA
Found at i:65898 original size:995 final size:986
Alignment explanation
Indices: 63481--67875 Score: 5985
Period size: 995 Copynumber: 4.4 Consensus size: 986
63471 TAGTATTTAT
* *
63481 GGATTTGTTTTTACGAACATCTGAATTGTGTTTCGATTTAATTAGAAATTAATTCGAAAAAAAAG
1 GGATTTGTTTTTACGAACATCTGAATTATGTTTCGATTTAATTAGAAATTAATTCGAAAAAATAG
* * * *
63546 GAAAAACGATATTAGAAGCGTGGAAAGCCCTTTAATATTTTTTTGCGATGAATTATATACTTTTT
66 GAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAAT-CTTTTTTGGGATGAATTATATACTTTTT
* *
63611 ATGAGTATTATGACAAAAAATTGAGGTAATAATTTTCGGTTCAATTTTTGCAAAATTTAAGCAGT
130 ATGAGTATTGTGACAAAAAATTGAGGTAATAATTTTCGGTTCAATTTTTGCAAAATTTAAGCGGT
* * * **
63676 AATCGTGTACTATCCATCACGGGTTTTGGCTAAAAACGCGTTCCGGGTCCCCGGTTCAGTTTTGC
195 AATCGT-TACTAACCATCAC-GGTTTTGGCTAAAAACGCCTTTCGGG-CCCCGACTCAGTTTTGC
*
63741 ATGA-TTTTTGCGTCAAGACTTCTTGCAGTATCTATTCTCATCTAACCAAATCTTAGGCACAATG
257 ATGATTTTTTGCGTCAAGACTTCTTGCAGTATCTATTCTCATCTAACCAAATCTCAGGCACAATG
*
63805 GATTTGAGGATTTGTTTTTACAAACATCTGAATTATGTTTCAATTTAATTAAAAGATTAATTC-G
322 GATTTGAGGATTTGTTTTTACAAACATCTGAATTATGTTTCGATTTAATT-AAA-ATTAATTCGG
* * * *
63869 AAAAAATAGGAAAAACGATATTAGAAGCATGAAAAGCCCTTCGATATGTTTTGGGATGAATTATA
385 AAAAAATAGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAATTTTTTTTGGGATGAATTATA
* * *
63934 TACTTTTTATGAGTATTGTGACAAAAAATTGAGGTAAAAAATTTCGGTTTAATTTTTGCAAAATT
450 TACTTTTTATGAGTATTGTGACAAAAAATTGAGATAAAAATTTTCGGTTCAATTTTTGCAAAATT
* * * * *
63999 TAAGCGGTAATCGTGTACTAACAATCACGGTTTTTGGCTAAAAACGTGTTCCGGGCCCCGGTTCA
515 TAAGCGGTAATCGTATACTAACCATCACGGTTTTTGGCTAAAAACGCGTCCCGGGCCCCGGCTCA
* * * * **
64064 GTTTTCCATGATTTTTTGCGCCAAGACCTCTTGTAATATCTATATTCATTTAACTGAATCTCA-G
580 GTTTTGCATGATTTTTTGCGTCAAGACTTCTTG-AATATCTATATTCATCTAACCAAATCTCAGG
* * * *
64128 C-CATCTTTGATTTGAGGATTTGTTTTAACGAGCATCTGAATTATATTCCGATTTAATTAGAAAT
644 CACA-C-TGGATTTGAGGATTTGTTTTTACGAACATCTGAATTATATTTCGATTTAATTAGAAAT
* *
64192 TAATTCGGAAAAAAAATAGGAAAAATGATATTAGAAGCATGAAAAGCCCTTCAATCTTTTTTTGG
707 TAATTC-GAAAAAAAATAGGAAAAACGATATTAGAAGCATGAAAAGCCCTTCAAT-ATTTTTTGG
* * * *
64257 GATGAATTATATACTTTTTATGAGTATTGTGACAAAAAATTGAGGTAATAATTTTCGGTTCAATT
770 GATGAATTATATACTTTTTATGAGTATTGTGACCAAAAATTGAGGGAAAAACTTTCGGTTCAATT
**
64322 TTTGCAAAATTTAAATGGTAATCGTG---AC-ATCACGAG-TTTTGGCTAAAAACGCGTTCCGGG
835 TTTGCAAAATTTAAGCGGTAATCGTGTACACAATCACG-GTTTTTGGCTAAAAACGCGTTCCGGG
* * *
64382 TCCTCGGCTCAGTTTTACATGATTTTTTGCGTCAAGACTTCTTCCAGTATATAT-TCTCATCTAA
899 -CC-CGGCTCAGTTTTGCATGATTTTTTGCGTCAAGACTTCTTCCAATATCTATAT-TCATCTAA
* *
64446 CCTAATCTTAGGCACAATGGATTTGA
961 CCAAATCTCAGGCACAATGGATTTGA
* * *
64472 GGATTTGTTTTTACAAACATCTGAATTATGTTTCAATATAATTAGAAATTAATTCGAAAAAAATA
1 GGATTTGTTTTTACGAACATCTGAATTATGTTTCGATTTAATTAGAAATTAATTCG-AAAAAATA
* *
64537 GGAAAAACGATATTAGAAGCATGAAAAGCCCATCAATCTTTTTTGGGGATGAATTATATACTTTT
65 GGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAATCTTTTTT-GGGATGAATTATATACTTTT
* * *
64602 TATGAGTATTGTGACCAAAAATTGAGGGAA-ACAATTTCGGTTCAATTTTTGCAAAATTTAAGCG
129 TATGAGTATTGTGACAAAAAATTGAGGTAATA-ATTTTCGGTTCAATTTTTGCAAAATTTAAGCG
* * * ** * *
64666 GAAATCGTGTACTAACCATAACAGTTTTTACTAATAACGCCTTTCGAGGCCCGGACTCAGTTTTG
193 GTAATCGT-TACTAACCATCACGGTTTTGGCTAAAAACGCCTTTCG-GGCCCCGACTCAGTTTTG
* *
64731 CATGA-TTTTTGCGTCAAGACTTCTTGCACTATCTATAT-TCATCTAACCGAATCTCAGGCACAA
256 CATGATTTTTTGCGTCAAGACTTCTTGCAGTATCTAT-TCTCATCTAACCAAATCTCAGGCACAA
* * * * * *
64794 TGGATTGGTGGATTTATTTTTACGAACATCTGAATTATGTTTTGAATTAATTAGAAATTAATTCG
320 TGGATTTGAGGATTTGTTTTTACAAACATCTGAATTATGTTTCGATTTAATTA-AAATTAATTCG
* *
64859 GACAAAAATACGAAAAGCGATATTAGAAGCGTGAAAAGCCCTTCAATCTTTTTTTGGGATGAATT
384 GA-AAAAATAGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAAT-TTTTTTTGGGATGAATT
*
64924 ATATACTTTTTATCAGTATTGTGACAAAAAATTGAGATAAAAATTTTCGGTTCAATTTTTGCAAA
447 ATATACTTTTTATGAGTATTGTGACAAAAAATTGAGATAAAAATTTTCGGTTCAATTTTTGCAAA
*
64989 ATTTAAGCGGTAATCGTATACTAACCATCACGGTTTTTGGCTAAAAACGCGATCCCGGTCCCCGG
512 ATTTAAGCGGTAATCGTATACTAACCATCACGGTTTTTGGCTAAAAACGCG-TCCCGGGCCCCGG
* *
65054 CTTAGTTTTGCATGATTTTTTGCGTCAAGACTTCTTGAAGTATCTAT-TCTCATATAACCAAATC
576 CTCAGTTTTGCATGATTTTTTGCGTCAAGACTTCTTGAA-TATCTATAT-TCATCTAACCAAATC
* ** * *
65118 TCAGGCACACTGGATTTGAGAATTTGTTTTTATTAACATCTGAATTATGTTTCGATTTACTTAGA
639 TCAGGCACACTGGATTTGAGGATTTGTTTTTACGAACATCTGAATTATATTTCGATTTAATTAGA
65183 AATTAATTCGAATAAAAAATAGGAAAAACGATATTAGAAGCATGAAAAGCCCTTCAATATTTTTT
704 AATTAATTCGAA-AAAAAATAGGAAAAACGATATTAGAAGCATGAAAAGCCCTTCAATATTTTTT
65248 GGGATGAATTATATACTTTTTATGAGTATTGTGACCAAAAATTGAGGGAAAAACTTTCGGTTCAA
768 GGGATGAATTATATACTTTTTATGAGTATTGTGACCAAAAATTGAGGGAAAAACTTTCGGTTCAA
* * *
65313 TTTTTGCAAAATTTAAGCGGAAATCGTGT-C-C-ATCACGGTTTTTTGGCTAAAAACGCCTTTCG
833 TTTTTGCAAAATTTAAGCGGTAATCGTGTACACAATCACGG-TTTTTGGCTAAAAACGCGTTCCG
*
65375 AGGCCCGGACTCAGTTTTGCATGATTTTTTGCGTCAAGACTTCTTGCAATATCTATATTCATCTA
897 -GGCCCGG-CTCAGTTTTGCATGATTTTTTGCGTCAAGACTTCTTCCAATATCTATATTCATCTA
* *
65440 AGCAAATCTCAGGCACAATGGATTTGT
960 ACCAAATCTCAGGCACAATGGATTTGA
* * *
65467 GGATTTGTTTTTACGAACATCTGAATTATATTTTGATTTAATTAGAAATTAATTCGACTAAAATA
1 GGATTTGTTTTTACGAACATCTGAATTATGTTTCGATTTAATTAGAAATTAATTCGA-AAAAATA
*
65532 GGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAATCATTTTTGGGATGAATTATATACTTTTT
65 GGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAATCTTTTTTGGGATGAATTATATACTTTTT
* * * * *
65597 ATGAGTATTGTGACCAAAAATTGAGGGAAAAACTTTCGGTTCAATTTTTGCAAAATTTAAGCGGA
130 ATGAGTATTGTGACAAAAAATTGAGGTAATAATTTTCGGTTCAATTTTTGCAAAATTTAAGCGGT
** * *
65662 AATCGTATACTAACCATCACGGTTCTTGGCTAAAAATTCCTTTCGAGGCCCAGATTCAGTTTTGC
195 AATCGT-TACTAACCATCACGGTT-TTGGCTAAAAACGCCTTTCG-GGCCCCGACTCAGTTTTGC
* * * *
65727 ATGATTTTTTGTGTCAAGACTTCTTGTAATATCTATAT-TCATCTAACCAAATCTCAAGCACAAT
257 ATGATTTTTTGCGTCAAGACTTCTTGCAGTATCTAT-TCTCATCTAACCAAATCTCAGGCACAAT
* * *
65791 GGATTTGTGGTTTTGTTTTTACGAACATCTGAATTATGTTTCGATTTAATTGAAAATTAATTCGG
321 GGATTTGAGGATTTGTTTTTACAAACATCTGAATTATGTTTCGATTTAATT-AAAATTAATTCGG
* *
65856 AAAAAATAGGAAAAACGATATTAGAAGCGTGAATATCCCTTCAATGTTTTTTTGGGATGAATTAT
385 AAAAAATAGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAAT-TTTTTTTGGGATGAATTAT
*
65921 ATACTTTTTATGAGTATTGTGACAAAAAATTGAGGA-AATAATTTTCGGTTCAATTTTTGCAAAA
449 ATACTTTTTATGAGTATTGTGACAAAAAATTGA-GATAAAAATTTTCGGTTCAATTTTTGCAAAA
* * * * *
65985 TTTAAGAGGTAATCGTATACTAACCACCACGGTTTTTGGCTAAAAACGCGTTCCGGGTACCCGAC
513 TTTAAGCGGTAATCGTATACTAACCATCACGGTTTTTGGCTAAAAACGCGTCCCGGG-CCCCGGC
* * * * * * *
66050 TCAGTTTTACATGATTTTTCGCATGAAGAATTCTTGCAGTAACTAT-TCTCATCTAACCAAATCT
577 TCAGTTTTGCATGATTTTTTGCGTCAAGACTTCTTG-AATATCTATAT-TCATCTAACCAAATCT
* *
66114 CAGGCACAATGGATTTGAGGATTTGTTTTTA-GAAACATCTGAATTATGTTTCGATTTAATTAGA
640 CAGGCACACTGGATTTGAGGATTTGTTTTTACG-AACATCTGAATTATATTTCGATTTAATTAGA
*
66178 AATTAATTCG--AAAAAATAGGAAAAATGATATTAGAAGCATGAAAAGCCCTTCAATATTTTTTG
704 AATTAATTCGAAAAAAAATAGGAAAAACGATATTAGAAGCATGAAAAGCCCTTCAATATTTTTTG
* *
66241 GGATGAATTTTATACTTTTTATGAGTATTGTGACCAAAAATTGAGAGAAAAACTTTCGGTTCAAT
769 GGATGAATTATATACTTTTTATGAGTATTGTGACCAAAAATTGAGGGAAAAACTTTCGGTTCAAT
*
66306 TTTTGCAAAATTTAAGCGG-AATCGTGTACTAACTATCACGGTTTTTGGCTAAAAACGCGTTCCG
834 TTTTGCAAAATTTAAGCGGTAATCGTGTAC--ACAATCACGGTTTTTGGCTAAAAACGCGTTCCG
* * *
66370 TGGCCCCGACTCAGTTTTGCAAGATTTTTTTCGTCAAGACTTCTTCCAATATCTATATTCATCTA
897 -GG-CCCGGCTCAGTTTTGCATGATTTTTTGCGTCAAGACTTCTTCCAATATCTATATTCATCTA
*
66435 ACCAAATATCAGGCACAATGGATTTGA
960 ACCAAATCTCAGGCACAATGGATTTGA
** *
66462 GGATTTGTTTTTACGAACATCTGAATTAAATTTCGATTTAATTGGAAATTAATTCGGAAAAAAAA
1 GGATTTGTTTTTACGAACATCTGAATTATGTTTCGATTTAATTAGAAATTAATTC-G--AAAAAA
*
66527 TAGGAAAAACGATATTACAAGCGTGAAAAGCCCTTCAATCTTTGTTTGGGATGAATTATATACTT
63 TAGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAATCTTT-TTTGGGATGAATTATATACTT
* *
66592 TTTATGAGTATTGTGACAAAAAATTGAGATAATAGTTTTCGG-TCAATTTTTGCAAAATTTAAGC
127 TTTATGAGTATTGTGACAAAAAATTGAGGTAATAATTTTCGGTTCAATTTTTGCAAAATTTAAGC
* * * *
66656 AGTAATCG-T-GT----A-C-GGGTTTTGG-TAAAAAC-ACTTTCCGGGTCCCCGACTCAGTTTT
192 GGTAATCGTTACTAACCATCACGGTTTTGGCTAAAAACGCCTTT-CGGG-CCCCGACTCAGTTTT
**
66711 GCATGATTTTTTGCGTCAAGTTTTCTTGCAGTATCTATTCTCATCTAACCAAATCTCAGGCACAA
255 GCATGATTTTTTGCGTCAAGACTTCTTGCAGTATCTATTCTCATCTAACCAAATCTCAGGCACAA
66776 TGGATTTGAGGATTTGTTTTTACAAACATCTGAATTATGTTTCGATTTAATTAGAAATTAATTC-
320 TGGATTTGAGGATTTGTTTTTACAAACATCTGAATTATGTTTCGATTTAATTA-AAATTAATTCG
* * *
66840 GAAAAAATAGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAATATTTTTGGGGATGAATTTT
384 GAAAAAATAGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAATTTTTTTTGGGATGAATTAT
* * * *
66905 ATACTTTTTATGAGTATTGTGACCAAAAATTGAGAGAAAAACTTTCGGTTCAATTTTTGTAAAAT
449 ATACTTTTTATGAGTATTGTGACAAAAAATTGAGATAAAAATTTTCGGTTCAATTTTTGCAAAAT
* *
66970 TTAAGCGG--AT-G--TACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCGTGGCGCCGGCT
514 TTAAGCGGTAATCGTATACTAACCATCACGGTTTTTGGCTAAAAACGCGTCCCG-GGCCCCGGCT
* * *
67030 CGGTTTTGCAAG-TTTTTTGCGTCAAGACTTCTTCCAATATCTATATTCATCTAACCAAATCTCA
578 CAGTTTTGCATGATTTTTTGCGTCAAGACTTCTT-GAATATCTATATTCATCTAACCAAATCTCA
*
67094 GGCACAGTGGATTTGAGGATTTG-TTTTACGAACATCTGAATTATATTTCGATTTAATTAGAAAT
642 GGCACACTGGATTTGAGGATTTGTTTTTACGAACATCTGAATTATATTTCGATTTAATTAGAAAT
* * * *
67158 TAATTCGGAAAAAAATAGGAAAAACGATATTAGAAGCGTGAAAATCCCTTCAATATTTTTTTTGG
707 TAATTCGAAAAAAAATAGGAAAAACGATATTAGAAGCATGAAAAGCCCTTCAATA-TTTTTTGGG
* * *
67223 ATGAATTATATAC-TTTTATGAGTATTGTG-CCAAAAAAAATTGAGGTAAAAATTTTCGGTTTAA
771 ATGAATTATATACTTTTTATGAGTATTGTGACC---AAAAATTGAGGGAAAAACTTTCGGTTCAA
* *
67286 TTTTTGCAAAATTTAAGCGGTAATCGTGTACTAACAATCACGGTTTCTGGCTAAAAACGTGTTCC
833 TTTTTGCAAAATTTAAGCGGTAATCGTGTAC--ACAATCACGGTTTTTGGCTAAAAACGCGTTCC
* * * * **
67351 GGTCCCCGGCTCAGTTTTCCATGATTTTTTGCGCCAAGACCTCTTGTAATATCTATATTCATCTA
896 GG-GCCCGGCTCAGTTTTGCATGATTTTTTGCGTCAAGACTTCTTCCAATATCTATATTCATCTA
* * * *
67416 ACTAAATCTCAGCCATC-TTTGATTTGA
960 ACCAAATCTCAGGCA-CAATGGATTTGA
* * *
67443 GGATTTGTTTTAACGAGCATCTGAATTATGTTCCGATTTAATTAGAAATTAATTCGGAAAAAACT
1 GGATTTGTTTTTACGAACATCTGAATTATGTTTCGATTTAATTAGAAATTAATTC-GAAAAAA-T
* *
67508 AGGAAAAACGATATTAGAAGCATGAAAAGCCCTACAATCTTTTTTTGGGATGAATTATATACTTT
64 AGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAATC-TTTTTTGGGATGAATTATATACTTT
* *
67573 TTGTGAGTATTGTGACAAAAAATTGAGGTAATAATTTTCGGTTCAATTTTTGCAAAATTTAAACG
128 TTATGAGTATTGTGACAAAAAATTGAGGTAATAATTTTCGGTTCAATTTTTGCAAAATTTAAGCG
* * * * * *
67638 GTAATCG----TGA-CATCACGGGTTTTGGCTAAAAAAGCGTTCCGTGTCCCCGGCTCAGTTTTG
193 GTAATCGTTACTAACCATCAC-GGTTTTGGCTAAAAACGCCTTTCG-GGCCCCGACTCAGTTTTG
* *
67698 CATGATTTTTTGCGTCAAGACTTCTTGCAGTATATATTCTCATCTAACCTAATCTCAGGCACAAT
256 CATGATTTTTTGCGTCAAGACTTCTTGCAGTATCTATTCTCATCTAACCAAATCTCAGGCACAAT
** *
67763 GGATTTGAGGATTTGTTTTTACAAACATCTGAATTATGTTTCGATTTAATTTCTAATTAAATCGA
321 GGATTTGAGGATTTGTTTTTACAAACATCTGAATTATGTTTCGATTTAA-TTAAAATTAATTCG-
* *
67828 ATAAAAAATTAGGAAAAACGATATTAGAAGCATGAAAAGCCCTTCAAT
384 -GAAAAAA-TAGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAAT
67876 CTCTTTT
Statistics
Matches: 3059, Mismatches: 269, Indels: 153
0.88 0.08 0.04
Matches are distributed among these distances:
977 45 0.01
978 67 0.02
979 118 0.04
980 119 0.04
981 202 0.07
982 46 0.02
983 3 0.00
984 81 0.03
985 60 0.02
986 278 0.09
987 9 0.00
988 4 0.00
989 7 0.00
990 48 0.02
991 205 0.07
992 313 0.10
993 223 0.07
994 285 0.09
995 681 0.22
996 133 0.04
997 74 0.02
998 58 0.02
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.36
Consensus pattern (986 bp):
GGATTTGTTTTTACGAACATCTGAATTATGTTTCGATTTAATTAGAAATTAATTCGAAAAAATAG
GAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAATCTTTTTTGGGATGAATTATATACTTTTTA
TGAGTATTGTGACAAAAAATTGAGGTAATAATTTTCGGTTCAATTTTTGCAAAATTTAAGCGGTA
ATCGTTACTAACCATCACGGTTTTGGCTAAAAACGCCTTTCGGGCCCCGACTCAGTTTTGCATGA
TTTTTTGCGTCAAGACTTCTTGCAGTATCTATTCTCATCTAACCAAATCTCAGGCACAATGGATT
TGAGGATTTGTTTTTACAAACATCTGAATTATGTTTCGATTTAATTAAAATTAATTCGGAAAAAA
TAGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAATTTTTTTTGGGATGAATTATATACTTT
TTATGAGTATTGTGACAAAAAATTGAGATAAAAATTTTCGGTTCAATTTTTGCAAAATTTAAGCG
GTAATCGTATACTAACCATCACGGTTTTTGGCTAAAAACGCGTCCCGGGCCCCGGCTCAGTTTTG
CATGATTTTTTGCGTCAAGACTTCTTGAATATCTATATTCATCTAACCAAATCTCAGGCACACTG
GATTTGAGGATTTGTTTTTACGAACATCTGAATTATATTTCGATTTAATTAGAAATTAATTCGAA
AAAAAATAGGAAAAACGATATTAGAAGCATGAAAAGCCCTTCAATATTTTTTGGGATGAATTATA
TACTTTTTATGAGTATTGTGACCAAAAATTGAGGGAAAAACTTTCGGTTCAATTTTTGCAAAATT
TAAGCGGTAATCGTGTACACAATCACGGTTTTTGGCTAAAAACGCGTTCCGGGCCCGGCTCAGTT
TTGCATGATTTTTTGCGTCAAGACTTCTTCCAATATCTATATTCATCTAACCAAATCTCAGGCAC
AATGGATTTGA
Done.