Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012527.1 Corchorus capsularis cultivar CVL-1 contig12548, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  152398

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12038--12067
14
2.1
15
93
6
53
43
6
20
30
1.77
19680--19710
2
15.5
2
100
0
62
48
0
0
51
1.00
23735--23827
39
2.4
38
89
8
143
53
17
4
24
1.61
42691--42793
51
2.0
51
92
0
170
19
18
20
41
1.90
56073--56104
2
16.0
2
93
0
55
53
0
0
46
1.00
56140--56183
15
3.0
14
83
9
61
70
4
25
0
1.06
57404--57636
117
2.0
119
81
5
276
33
15
14
36
1.88
64088--64140
25
2.1
25
96
0
97
50
15
9
24
1.73
71701--71995
33
8.9
33
94
0
500
39
6
23
30
1.79
74344--74473
33
3.9
33
92
0
197
40
6
21
32
1.78
80749--80851
31
3.4
30
76
10
102
29
14
21
34
1.93
95434--95534
49
2.1
49
100
0
202
38
21
7
31
1.82
102403--102474
29
2.4
31
86
11
112
48
11
6
33
1.65
111459--111575
32
3.6
32
91
1
171
16
42
28
12
1.84
111632--111749
33
3.6
32
83
11
114
12
34
41
11
1.79
129625--129722
49
2.0
49
91
0
160
20
21
24
33
1.97
129726--129767
20
2.1
20
90
0
66
21
23
19
35
1.96
139669--139719
22
2.3
22
96
0
93
41
11
13
33
1.81
143371--143449
33
2.4
33
84
0
113
18
1
65
13
1.33
143404--143461
27
2.0
28
90
9
91
17
0
65
17
1.27
143401--143461
30
2.0
30
90
0
95
18
0
65
16
1.27
145229--145265
9
4.1
9
85
0
56
10
5
51
32
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
145205--145261
24
2.4
24
78
0
69
10
7
54
28
1.60
145363--145420
30
1.9
30
96
0
107
13
1
63
20
1.38
145365--145492
15
8.6
15
70
10
93
13
1
61
23
1.40
145408--145462
21
2.6
21
75
8
58
10
1
56
30
1.44
145450--145492
18
2.4
18
88
7
61
11
0
69
18
1.17
145458--145497
21
1.9
21
85
10
55
12
2
72
12
1.22
149930--150051
60
2.0
60
91
0
199
31
20
18
28
1.97
151584--151640
3
19.0
3
85
0
60
8
1
63
26
1.34

Tables:   1

The End!