genome.fa.s12528.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012528.1 Corchorus capsularis cultivar CVL-1 contig12549, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  115645

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68--3638	330	10.8	329	80	6	3820	35	16	14	33	1.89
3921--3952	2	16.5	2	93	6	57	50	0	0	50	1.00
5937--5981	15	3.0	15	87	6	56	31	0	2	66	1.04
6507--7166	293	2.3	293	97	0	1234	24	11	19	44	1.84
8118--8146	13	2.1	14	93	6	51	58	13	0	27	1.36
8109--8151	23	1.9	22	95	4	77	58	11	0	30	1.34
8338--8375	18	2.1	19	90	5	60	42	26	5	26	1.76
19956--19999	15	3.1	15	70	29	51	25	6	4	63	1.38
22369--22555	92	2.0	92	100	0	374	37	16	12	33	1.87
32814--32994	58	3.2	55	78	9	204	34	17	18	29	1.94
39503--39645	49	3.1	49	61	25	121	29	16	20	34	1.94
39491--39669	88	2.0	88	100	0	358	32	15	18	32	1.93
47911--47986	38	2.0	38	100	0	152	50	21	10	18	1.76
48205--48247	21	2.0	21	86	0	59	18	34	9	37	1.83
57082--57131	2	25.0	2	91	0	82	54	0	0	46	1.00
60139--60163	1	25.0	1	100	0	50	0	0	100	0	0.00
72657--72685	5	5.8	5	100	0	58	82	0	17	0	0.66
76852--76884	1	33.0	1	100	0	66	0	0	0	100	0.00
80208--80238	2	15.5	2	100	0	62	48	0	0	51	1.00
87638--87689	25	2.1	25	96	0	95	25	23	15	36	1.93
89526--89594	22	3.3	22	64	15	65	37	1	17	43	1.58
89521--89599	40	2.0	40	100	0	158	37	2	17	41	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90142--90166	4	6.2	4	100	0	50	24	0	0	76	0.80
93182--93209	2	14.0	2	100	0	56	50	0	0	50	1.00
113041--113275	38	5.9	38	74	11	218	31	9	21	37	1.86
113039--113285	82	3.0	82	89	0	386	31	10	20	38	1.86
114808--114873	29	2.3	29	86	5	89	18	27	16	37	1.92
115037--115115	29	2.7	30	78	4	88	39	12	27	20	1.89

Tables:   1

The End!