Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012529.1 Corchorus capsularis cultivar CVL-1 contig12550, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82027

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1446--1475
2
15.5
2
93
6
53
53
0
0
46
1.00
20942--20976
11
3.2
11
87
0
52
2
2
14
80
0.95
20925--20976
17
3.2
16
78
15
54
1
5
15
76
1.05
22334--22390
31
1.9
28
86
10
78
56
7
14
22
1.62
22984--23081
30
3.3
29
78
5
90
15
22
28
33
1.94
35548--35580
12
2.6
13
85
4
50
57
0
3
39
1.14
38196--40636
336
7.3
330
79
6
2376
36
17
13
31
1.89
44837--44939
52
2.0
52
92
3
172
22
26
13
37
1.91
48574--48742
84
2.0
84
100
0
338
33
14
21
30
1.93
51109--51147
3
13.0
3
84
10
53
2
30
2
64
1.21
53468--53500
5
7.0
5
86
13
52
39
21
0
39
1.53
53476--53500
13
1.9
13
100
0
50
40
20
0
40
1.52
54380--54415
18
1.9
19
88
5
56
52
16
13
16
1.74
69939--70102
31
5.5
31
69
12
119
27
17
18
36
1.93
69936--70107
59
2.9
59
86
2
229
28
16
19
36
1.93
71183--71231
4
12.0
4
95
4
89
48
24
0
26
1.51
77291--77328
12
3.0
13
84
7
60
23
36
5
34
1.78
77328--77410
40
2.1
40
93
0
139
40
16
14
27
1.88

Tables:   1

The End!