Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012531.1 Corchorus capsularis cultivar CVL-1 contig12552, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57569

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1826--1899
27
2.7
27
85
2
85
41
29
9
18
1.82
1826--1906
28
3.0
27
83
1
90
44
28
8
18
1.79
1970--2036
28
2.4
28
85
2
82
44
22
11
20
1.84
1787--2073
130
2.2
129
87
2
407
40
27
12
19
1.88
5727--7272
667
2.3
658
81
7
1692
34
13
14
37
1.86
5727--7164
334
4.3
328
77
11
1330
34
14
14
37
1.86
7243--7305
31
2.0
31
96
0
117
33
14
22
30
1.93
7803--7884
40
2.1
40
88
4
123
47
6
6
40
1.53
8120--8172
27
2.0
27
88
7
81
62
0
7
30
1.23
7988--8283
147
2.0
150
85
5
406
53
3
9
33
1.50
19918--19957
2
20.0
2
100
0
80
50
0
0
50
1.00
21213--21334
57
2.0
61
86
9
171
19
30
6
43
1.76
26916--27070
70
2.2
70
88
2
222
49
0
12
36
1.46
30872--30959
43
2.0
43
100
0
176
44
17
11
27
1.82
31219--31276
21
2.9
20
84
5
73
32
18
12
36
1.88
36866--36904
21
1.9
20
84
5
51
46
17
5
30
1.70
38451--38478
2
14.0
2
100
0
56
50
0
0
50
1.00
41123--42386
465
2.7
460
89
1
1843
31
19
17
31
1.95
43309--43353
21
2.1
22
84
12
58
15
33
8
42
1.78
44409--44506
39
2.5
39
80
3
117
24
20
28
26
1.99
56717--56763
23
2.1
23
92
4
78
31
19
8
40
1.81

Tables:   1

The End!