Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012533.1 Corchorus capsularis cultivar CVL-1 contig12554, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 19105
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.33


Found at i:899 original size:47 final size:49

Alignment explanation


    Indices: 807--902  Score: 160
    Period size: 47  Copynumber: 2.0  Consensus size: 49

        797 CAAAAAAAAT

                                     *                        
        807 GAAAATTGTGTAATTGTATAATTTTTTTTGTTTCTAAGGCATATACGTAC
          1 GAAAATTGTGTAATTGTATAA-TTTCTTTGTTTCTAAGGCATATACGTAC

                                                            
        857 GAAAATTGTGTAATTGTAT-A-TTCTTTGTTTCTAAGGCATATACGTA
          1 GAAAATTGTGTAATTGTATAATTTCTTTGTTTCTAAGGCATATACGTA

        903 TTAATCTTCT


Statistics
Matches: 45,  Mismatches: 1, Indels: 3
        0.92            0.02        0.06

Matches are distributed among these distances:
  47   25  0.56
  49    1  0.02
  50   19  0.42

ACGTcount: A:0.30, C:0.08, G:0.17, T:0.45


Consensus pattern (49 bp):   
GAAAATTGTGTAATTGTATAATTTCTTTGTTTCTAAGGCATATACGTAC
Done.