Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012535.1 Corchorus capsularis cultivar CVL-1 contig12556, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11587
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34


Found at i:6908 original size:14 final size:14

Alignment explanation


    Indices: 6885--6915  Score: 53
    Period size: 14  Copynumber: 2.2  Consensus size: 14

       6875 TAATTTTTTT

                 *        
       6885 AAAAAGAAAAACAA
          1 AAAAACAAAAACAA

                          
       6899 AAAAACAAAAACAA
          1 AAAAACAAAAACAA

               
       6913 AAA
          1 AAA

       6916 CGATTTGAAG


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  14   16  1.00

ACGTcount: A:0.87, C:0.10, G:0.03, T:0.00


Consensus pattern (14 bp):   
AAAAACAAAAACAA
Done.