Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012544.1 Corchorus capsularis cultivar CVL-1 contig12565, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53738

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19156--19458
32
9.0
32
84
12
394
31
8
25
34
1.85
19281--19347
21
3.2
21
68
4
64
32
5
28
32
1.81
19246--19503
73
3.5
73
78
18
309
30
7
27
34
1.84
19215--19458
105
2.3
104
96
1
445
30
7
26
35
1.85
19387--19451
21
3.2
21
69
8
71
33
6
26
33
1.81
19383--19520
45
3.3
41
87
8
197
31
5
28
34
1.81
21751--23861
331
6.4
330
77
8
1843
36
15
15
32
1.89
23755--23966
105
2.0
105
97
0
397
33
16
23
26
1.96
24334--24424
42
2.2
40
77
9
94
29
18
18
32
1.95
25922--26052
53
2.5
53
91
0
217
35
23
34
6
1.82
26030--26077
23
2.0
24
92
4
80
50
25
20
4
1.66
26063--26129
21
3.2
21
89
0
98
53
31
13
1
1.49
26040--26131
42
2.1
43
84
7
116
52
29
16
2
1.56
34866--34900
12
2.9
12
86
0
52
0
22
20
57
1.41
37597--37621
7
3.6
7
100
0
50
44
16
28
12
1.83
38842--38910
30
2.3
29
80
2
84
28
11
24
34
1.91
41700--41727
14
2.0
14
100
0
56
35
0
21
42
1.53
44177--44246
29
2.4
29
82
2
86
40
24
11
24
1.88
47968--48011
2
23.0
2
84
9
56
45
4
0
50
1.22
50677--50710
16
2.1
16
100
0
68
41
17
11
29
1.85
51500--51525
2
13.0
2
100
0
52
50
0
0
50
1.00
52993--53026
12
2.7
13
90
9
61
79
8
5
5
1.05
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52993--53030
12
3.2
12
92
7
60
78
7
7
5
1.07

Tables:   1

The End!