Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012551.1 Corchorus capsularis cultivar CVL-1 contig12572, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53750

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--1956
323
6.0
322
79
8
2211
34
17
15
32
1.91
1690--2515
289
2.9
284
80
6
846
36
15
12
34
1.86
2822--3981
331
3.5
327
78
9
1182
34
15
14
35
1.88
2567--3998
654
2.2
647
83
5
1709
34
16
14
35
1.89
2567--4018
331
4.4
321
75
9
1181
34
15
14
35
1.89
19573--19657
42
2.0
42
93
0
143
42
22
14
21
1.88
20866--20895
1
30.0
1
100
0
60
100
0
0
0
0.00
22727--23718
417
2.4
403
82
8
1166
35
15
12
35
1.86
27586--27627
14
2.8
16
85
14
70
50
14
9
26
1.73
33532--33588
25
2.2
25
87
3
78
10
24
7
57
1.56
34543--34569
6
4.5
6
100
0
54
37
33
0
29
1.58
50968--51036
31
2.5
27
79
20
88
39
8
14
37
1.77
50978--51036
31
2.0
29
93
6
100
33
10
13
42
1.78

Tables:   1

The End!