Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012556.1 Corchorus capsularis cultivar CVL-1 contig12577, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50970

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1620--1658
20
2.0
20
85
5
53
28
23
5
43
1.75
7506--7537
5
6.8
5
92
7
50
81
0
0
18
0.70
8611--8663
21
2.6
21
84
3
63
28
30
32
9
1.88
15946--15978
7
4.7
7
92
7
50
0
15
0
84
0.61
16309--16374
27
2.4
27
87
5
98
40
25
18
15
1.89
16696--16739
23
2.0
21
91
8
70
20
27
18
34
1.96
16666--17094
50
8.6
50
87
1
592
24
28
11
35
1.90
16870--16958
27
3.4
27
67
17
80
23
30
11
34
1.90
19310--19371
29
2.1
29
82
11
74
8
11
4
75
1.16
23119--23149
6
5.3
6
96
3
55
51
12
0
35
1.40
24502--24533
11
2.9
11
90
0
55
43
18
0
37
1.51
27348--27388
15
2.7
15
96
0
73
7
29
19
43
1.78
28795--28825
6
5.3
6
96
3
55
51
12
0
35
1.40
30178--30209
11
2.9
11
90
0
55
43
18
0
37
1.51
34512--34547
18
2.0
18
88
0
54
41
13
36
8
1.75
34618--34704
43
2.0
44
95
2
158
29
19
8
42
1.80
38373--38504
39
3.5
38
80
7
117
48
8
15
27
1.74
38538--38647
34
3.2
33
67
17
87
50
5
16
27
1.66
38545--38783
124
1.9
124
84
8
315
49
6
17
26
1.70
38670--38799
34
3.8
34
73
15
124
52
6
14
26
1.65
38768--38845
40
1.9
41
92
7
133
51
7
16
24
1.71
38658--38839
69
2.6
73
78
13
211
51
6
16
25
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38669--38901
74
3.2
72
78
8
233
50
6
17
26
1.70
38940--38979
21
1.9
21
84
0
53
57
2
22
17
1.52
38967--39069
7
14.6
7
67
13
50
54
1
24
19
1.54
38952--39063
50
2.3
50
82
4
129
55
1
24
18
1.52
38987--39113
35
3.6
35
84
3
148
52
3
25
18
1.60
39001--39069
28
2.4
29
76
7
70
59
1
21
17
1.45
39100--39361
22
11.7
22
72
14
164
54
6
19
19
1.66
39141--39172
16
1.9
17
93
6
57
62
3
12
21
1.43
39118--39177
29
2.1
29
80
0
66
61
3
15
20
1.47
39175--39453
43
6.7
41
79
10
255
50
7
21
20
1.72
39294--39359
15
4.5
15
70
24
50
56
6
18
19
1.62
39179--39357
65
2.8
64
81
9
193
51
7
20
19
1.71
39363--39453
21
4.3
21
83
2
103
48
6
23
21
1.73
40258--40295
18
2.1
18
90
0
58
39
18
34
7
1.80
41748--41783
13
2.8
13
91
0
54
27
8
33
30
1.86
44556--44921
156
2.3
155
78
6
384
34
19
15
30
1.93

Tables:   1

The End!