genome.fa.s12558.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012558.1 Corchorus capsularis cultivar CVL-1 contig12579, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34999

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
294--358	18	3.3	18	67	29	51	9	24	46	20	1.79
1855--1886	6	5.5	6	96	3	57	56	15	0	28	1.40
1855--1893	18	2.2	17	86	4	51	56	15	2	25	1.52
8259--8333	35	2.1	35	85	9	100	54	8	9	28	1.60
15384--15448	18	3.3	18	67	29	51	7	24	46	21	1.77
20451--20491	3	13.7	3	94	0	73	29	0	0	70	0.87
21811--21986	86	2.0	86	100	0	352	30	17	18	34	1.93
23757--23905	75	2.0	75	86	2	210	38	10	19	31	1.86
24348--24485	45	3.1	45	95	0	240	37	7	18	36	1.79
25502--25600	51	1.9	51	89	0	153	34	17	12	36	1.87
26128--26625	70	7.2	69	88	2	671	25	27	18	28	1.98
26128--26648	139	3.8	139	88	2	721	25	27	18	28	1.98
26806--27213	8	55.9	8	67	21	127	29	23	3	43	1.70
26803--26913	22	5.1	22	80	13	108	31	24	0	43	1.61
26803--27214	14	28.4	14	66	20	133	29	22	3	43	1.69
26814--27022	36	5.6	36	75	11	179	30	23	2	43	1.66
26886--26998	22	5.2	22	75	14	101	30	22	2	45	1.66
26961--27020	22	2.8	21	85	10	68	31	21	3	43	1.69
27038--27149	22	5.2	22	76	8	70	26	22	5	45	1.73
27158--27228	24	2.9	24	87	4	97	30	25	4	39	1.75
27308--27364	8	7.6	8	71	15	50	26	22	5	45	1.73
27241--27364	22	5.6	22	76	8	117	25	24	7	43	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27301--27575	14	19.4	14	66	24	66	28	21	6	44	1.76
27301--27437	58	2.4	57	76	7	141	27	21	5	44	1.75
27344--27495	36	4.4	36	70	18	124	31	21	5	42	1.75
27376--27466	22	4.1	22	85	5	112	30	20	4	43	1.71
27301--27522	80	2.8	78	80	9	225	28	21	6	43	1.77
27350--27466	44	2.7	44	75	2	119	31	21	4	42	1.72
27448--27514	22	3.1	21	80	6	73	32	20	5	40	1.77
33469--34056	69	8.6	69	89	2	819	27	17	29	25	1.97
34905--34992	6	14.8	6	84	10	119	2	15	0	81	0.78
34886--34970	13	6.8	13	86	9	106	1	18	0	80	0.79
34902--34993	25	3.3	28	72	20	77	2	16	0	81	0.79
34906--34985	29	2.7	30	90	7	121	1	16	0	82	0.73

Tables:   1

The End!