Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012561.1 Corchorus capsularis cultivar CVL-1 contig12582, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 16846
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32


Found at i:4687 original size:11 final size:10

Alignment explanation


    Indices: 4672--4707  Score: 54
    Period size: 10  Copynumber: 3.5  Consensus size: 10

       4662 AAAACTCAGG

                     *
       4672 GAAAAAAAAT
          1 GAAAAAAAAA

                      
       4682 GAAAAAAAAA
          1 GAAAAAAAAA

                       
       4692 GAAAAAAAAAA
          1 G-AAAAAAAAA

                 
       4703 GAAAA
          1 GAAAA

       4708 GATGAAGATG


Statistics
Matches: 24,  Mismatches: 1, Indels: 2
        0.89            0.04        0.07

Matches are distributed among these distances:
  10   14  0.58
  11   10  0.42

ACGTcount: A:0.86, C:0.00, G:0.11, T:0.03


Consensus pattern (10 bp):   
GAAAAAAAAA

Found at i:13117 original size:14 final size:13

Alignment explanation


    Indices: 13098--13130  Score: 50
    Period size: 14  Copynumber: 2.5  Consensus size: 13

      13088 CATTAAAAAC

                          
      13098 CTTTTTTTCTTTTT
          1 CTTTTTTT-TTTTT

                         
      13112 CTTTTTTTTTTTT
          1 CTTTTTTTTTTTT

                   
      13125 -TTTTTT
          1 CTTTTTT

      13131 GTAAAATCAC


Statistics
Matches: 19,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  12    6  0.32
  13    5  0.26
  14    8  0.42

ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91


Consensus pattern (13 bp):   
CTTTTTTTTTTTT
Done.