Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012562.1 Corchorus capsularis cultivar CVL-1 contig12583, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40287

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7587--7616
14
2.1
14
100
0
60
30
0
13
56
1.37
7980--8039
24
2.5
25
86
10
81
55
0
0
45
0.99
7988--8156
65
2.6
65
94
2
286
50
2
1
44
1.27
8145--8171
6
4.5
6
100
0
54
85
0
0
14
0.61
9161--9240
32
2.5
32
89
0
124
33
37
20
8
1.83
9778--9859
42
2.0
42
90
0
128
37
18
6
37
1.76
18276--18614
156
2.2
154
80
9
350
35
18
14
30
1.91
26116--26182
33
2.0
33
94
0
116
10
28
38
22
1.87
30605--30700
30
3.1
30
84
8
122
9
27
38
25
1.86
30605--30686
32
2.6
32
92
5
132
8
25
40
25
1.84
39027--39392
156
2.3
155
78
6
384
35
20
14
30
1.92

Tables:   1

The End!