Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012569.1 Corchorus capsularis cultivar CVL-1 contig12590, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29851

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1023--1071
24
2.0
24
100
0
98
42
4
20
32
1.71
8210--8259
26
1.9
26
91
0
82
12
26
20
42
1.86
10225--10249
8
3.1
8
100
0
50
24
12
12
52
1.72
12059--12134
30
2.6
29
79
6
91
15
28
14
40
1.87
18061--18127
34
2.0
33
85
8
91
20
8
11
58
1.60
18778--18807
12
2.5
12
100
0
60
0
13
33
53
1.40
19009--19055
16
2.9
16
69
12
51
8
8
40
42
1.66
19084--19127
23
1.9
23
90
0
70
2
15
50
31
1.57
19919--20362
166
2.7
167
83
4
551
40
15
13
29
1.86
20476--20502
2
13.5
2
100
0
54
48
0
0
51
1.00
22250--22310
30
2.0
30
93
0
104
49
8
32
9
1.66
22864--22889
8
3.2
8
100
0
52
46
0
23
30
1.53
24256--24282
6
4.5
6
100
0
54
29
0
14
55
1.40

Tables:   1

The End!