Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012570.1 Corchorus capsularis cultivar CVL-1 contig12591, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43158

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1304--1337
12
2.7
13
86
9
52
23
11
8
55
1.63
1334--1360
6
4.5
6
100
0
54
29
0
14
55
1.40
3992--4042
25
2.0
26
85
11
70
62
0
3
33
1.13
5255--5288
2
17.0
2
100
0
68
50
0
0
50
1.00
5723--5787
30
2.1
31
88
2
96
44
4
21
29
1.72
5837--5905
11
6.2
12
74
12
51
1
31
0
66
1.00
6200--6233
17
1.9
18
88
5
52
58
29
0
11
1.33
6909--6942
2
17.0
2
100
0
68
50
0
0
50
1.00
7690--7740
16
3.2
16
85
0
66
29
19
1
49
1.60
7718--7813
24
4.1
24
73
18
94
23
19
2
54
1.55
7684--7821
45
3.2
43
80
11
140
28
21
2
47
1.65
7910--7949
16
2.6
15
80
7
53
20
17
0
62
1.33
8022--8050
14
2.0
15
93
6
51
27
10
0
62
1.28
8206--8298
37
2.6
36
80
11
111
29
18
7
45
1.76
8206--8436
63
3.4
69
75
17
214
29
17
5
46
1.71
8341--8445
36
3.0
36
74
13
110
29
16
2
51
1.58
18708--18748
3
13.0
3
85
10
55
29
2
2
65
1.18
18708--18748
10
4.3
9
82
11
55
29
2
2
65
1.18
18708--18745
13
2.9
13
88
0
58
28
2
2
65
1.19
18708--18749
16
2.6
17
88
7
61
28
2
2
66
1.16
21707--21805
45
2.3
43
85
7
128
26
21
3
49
1.64
21894--21933
16
2.6
15
80
7
53
20
17
0
62
1.33
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22190--22282
37
2.6
36
78
11
102
30
19
7
43
1.78
22191--22420
63
3.4
69
75
15
219
29
18
6
45
1.74
22257--22308
25
2.0
26
85
10
72
28
17
11
42
1.84
22286--22417
36
3.7
35
72
19
103
28
17
5
49
1.68
22287--22429
70
2.0
68
87
10
200
27
17
4
50
1.66
22325--22434
36
3.1
36
76
13
120
27
17
3
51
1.61
27445--27502
29
2.0
29
96
0
107
31
15
3
50
1.61
28907--28936
13
2.3
13
94
0
51
56
0
43
0
0.99
32819--32952
68
2.0
67
95
1
241
28
13
18
39
1.89
33606--33715
34
3.4
35
80
13
128
19
39
30
11
1.87
33655--33739
33
2.5
34
84
5
102
14
40
35
10
1.80
34115--34159
21
2.1
21
91
0
72
17
31
11
40
1.85
34392--34493
32
3.2
31
79
8
123
13
39
33
13
1.84
34417--34520
33
3.2
33
79
8
113
14
36
36
12
1.84
34379--34520
65
2.2
64
86
5
187
15
39
32
12
1.85
34379--34556
65
2.7
64
81
5
178
14
37
34
13
1.86
34609--34690
33
2.5
33
95
0
146
12
34
40
13
1.82
34609--34729
33
3.6
34
88
4
133
13
33
38
14
1.85
35066--35095
15
2.1
14
93
6
51
33
0
0
66
0.92
35071--35109
20
2.0
20
89
0
60
28
0
0
71
0.86
36054--36091
20
1.9
20
88
0
58
65
0
2
31
1.06
36752--36780
2
14.5
2
100
0
58
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37388--37429
21
1.9
21
90
9
66
45
9
0
45
1.36
38329--38379
24
2.1
24
100
0
102
7
23
7
60
1.50

Tables:   1

The End!